Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47630 * 2 1 4 4 C 1.50701 * 109.47048 * 240.00084 * 2 1 3 5 5 H 1.08007 * 119.99727 * 239.99987 * 4 2 1 6 6 C 1.37873 * 120.00403 * 60.00187 * 4 2 1 7 7 N 1.31516 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00319 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47327 * 59.99709 * 8 6 4 10 10 H 1.48500 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47109 * 299.99599 * 8 6 4 12 12 N 1.46497 * 109.47130 * 119.99945 * 2 1 3 13 13 C 1.46507 * 119.99915 * 60.00128 * 12 2 1 14 14 C 1.34777 * 120.00126 * 239.99643 * 12 2 1 15 15 O 1.21277 * 119.99735 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00094 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.47440 * 85.00283 * 16 14 12 18 18 N 1.46907 * 109.47270 * 325.00253 * 16 14 12 19 19 C 1.53003 * 109.47204 * 205.00510 * 16 14 12 20 20 C 1.53001 * 117.51964 * 111.28411 * 19 16 14 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 16 22 22 H 1.09002 * 109.46984 * 59.99947 * 1 2 3 23 23 H 1.09003 * 109.47180 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47098 * 300.00229 * 1 2 3 25 25 H 0.97003 * 119.99462 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46987 * 269.99610 * 13 12 2 27 27 H 1.08993 * 109.46784 * 29.99844 * 13 12 2 28 28 H 1.09001 * 109.46878 * 150.00443 * 13 12 2 29 29 H 1.08996 * 109.47501 * 179.97438 * 17 16 14 30 30 H 1.09004 * 109.47169 * 300.00441 * 17 16 14 31 31 H 1.09005 * 109.46926 * 59.99570 * 17 16 14 32 32 H 1.00894 * 111.00000 * 176.04317 * 18 16 14 33 33 H 1.00901 * 111.00027 * 300.00437 * 18 16 14 34 34 H 1.09002 * 115.54973 * 325.58194 * 19 16 14 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 16 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 16 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0858 1.1256 1.8915 16 6 3.2950 -0.7458 3.3140 17 6 4.5789 -1.5064 2.9762 18 7 2.2744 -1.6924 3.7836 19 6 3.5836 0.2794 4.4125 20 6 2.6705 0.2761 5.6401 21 6 4.1038 -0.2474 5.7515 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1608 -3.4844 26 1 0.7375 -2.1444 1.9993 27 1 1.5295 -2.5968 0.4708 28 1 2.4628 -2.5819 1.9864 29 1 4.9421 -2.0197 3.8665 30 1 4.3733 -2.2367 2.1936 31 1 5.3362 -0.8040 2.6277 32 1 2.6119 -2.2275 4.5696 33 1 1.4161 -1.2142 4.0134 34 1 3.9620 1.2423 4.0692 35 1 2.4480 1.2369 6.1044 36 1 1.8636 -0.4562 5.6652 37 1 4.2401 -1.3244 5.8499 38 1 4.8243 0.3690 6.2891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = -16.788846 kcal Electronic energy + Delta-G solvation = -18418.841391 eV Core-core repulsion = 15682.892113 eV Total energy + Delta-G solvation = -2735.949277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41025 -38.84892 -37.06397 -35.19740 -34.00375 -31.03434 -30.24942 -27.43462 -27.30578 -25.68276 -23.53042 -23.16477 -21.06121 -19.41179 -18.42029 -17.86643 -17.54832 -16.82656 -16.65561 -15.91803 -15.55216 -15.31455 -14.73970 -14.24870 -14.12507 -13.66055 -13.42785 -13.17322 -13.02581 -12.91829 -12.76433 -12.65441 -12.64816 -12.38251 -12.29895 -12.15986 -12.10042 -11.33913 -11.18092 -11.08518 -10.59419 -10.43452 -9.44792 -9.20313 -8.13523 -6.30402 1.40956 1.43797 1.51278 1.82333 2.33902 2.52632 2.88555 3.13598 3.44262 3.68626 3.72646 3.94059 4.11566 4.41465 4.45861 4.69975 4.72062 4.79787 4.84056 4.86314 4.92436 4.99468 5.00568 5.15483 5.17142 5.20602 5.27291 5.42071 5.48617 5.63948 5.73111 5.98273 6.11494 6.19161 6.56530 6.77696 6.96380 7.34189 7.55159 8.90536 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039674 B = 0.006547 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.581004 B = 4275.642454 C = 4392.410950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.258 3.742 3 H 0.002 0.998 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.101 3.899 14 C 0.501 3.499 15 O -0.614 6.614 16 C 0.149 3.851 17 C -0.129 4.129 18 N -0.816 5.816 19 C -0.197 4.197 20 C -0.181 4.181 21 C -0.145 4.145 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.017 0.983 25 H 0.264 0.736 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.360 0.640 33 H 0.348 0.652 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -8.849 15.861 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.155 3.845 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.041 4.041 14 C 0.289 3.711 15 O -0.496 6.496 16 C 0.053 3.947 17 C -0.187 4.187 18 N -0.352 5.352 19 C -0.218 4.218 20 C -0.218 4.218 21 C -0.182 4.182 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.363 -8.511 14.875 17.465 hybrid contribution 0.138 1.004 -0.433 1.102 sum 3.501 -7.506 14.442 16.649 Atomic orbital electron populations 1.21823 0.97219 0.99932 0.99662 1.18525 0.91625 0.92031 0.82294 0.97960 1.21552 1.31840 1.12966 0.91225 0.92233 1.25777 0.95102 0.95680 1.02113 1.70031 1.37383 1.23996 1.24436 0.85487 0.78401 0.79006 0.77990 1.18619 1.20808 1.20227 1.48157 1.47812 1.13745 1.21539 1.22008 1.02441 0.79828 0.99780 1.21200 0.78201 0.86142 0.85591 1.90592 1.60510 1.19842 1.78698 1.20130 0.93921 0.90887 0.89754 1.21759 0.93745 0.99592 1.03613 1.59435 1.05856 1.27036 1.42895 1.22813 1.08051 1.00815 0.90134 1.23180 0.94865 1.03750 0.99975 1.23064 0.96302 1.02530 0.96317 0.91567 0.93590 0.96370 0.92673 0.92303 0.94236 0.87157 0.88018 0.91695 0.93458 0.82309 0.83677 0.90229 0.88999 0.87063 0.86217 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 2 C 0.26 14.13 2.64 44.24 0.12 14.24 16 3 H 0.00 0.16 6.90 -2.39 -0.02 0.14 16 4 C -0.54 -30.47 7.99 25.60 0.20 -30.26 16 5 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -54.73 11.32 21.45 0.24 -54.49 16 8 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.58 -25.98 2.75 -826.81 -2.28 -28.26 16 13 C 0.10 3.50 7.97 127.77 1.02 4.52 16 14 C 0.50 21.67 6.59 87.66 0.58 22.25 16 15 O -0.61 -33.02 15.13 -3.02 -0.05 -33.07 16 16 C 0.15 4.25 0.64 2.78 0.00 4.25 16 17 C -0.13 -3.24 8.37 71.98 0.60 -2.64 16 18 N -0.82 -16.65 4.39 -154.52 -0.68 -17.33 16 19 C -0.20 -5.24 4.96 -10.79 -0.05 -5.30 16 20 C -0.18 -3.53 9.62 30.59 0.29 -3.23 16 21 C -0.15 -2.43 9.42 30.60 0.29 -2.14 16 22 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 23 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 27 H 0.04 1.49 7.02 -2.39 -0.02 1.47 16 28 H 0.11 3.16 4.45 -2.39 -0.01 3.15 16 29 H 0.10 1.71 7.29 -2.39 -0.02 1.69 16 30 H 0.06 1.71 6.84 -2.39 -0.02 1.69 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.36 4.79 7.92 -89.70 -0.71 4.08 16 33 H 0.35 7.28 7.43 -89.69 -0.67 6.61 16 34 H 0.08 2.77 7.33 -2.39 -0.02 2.75 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.75 6.15 -2.39 -0.01 1.74 16 37 H 0.12 1.39 7.20 -2.39 -0.02 1.38 16 38 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -72.20 295.15 3.11 -69.09 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.30 Total: 20.82 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 4.14 Total: -3.00 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -2.71 Total: -100.07 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.05 Total: -33.07 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.20 3.11 -69.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.297 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds