Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46989 * 2 1 4 4 C 1.50694 * 109.47188 * 120.00482 * 2 1 3 5 5 H 1.08001 * 120.00207 * 120.00580 * 4 2 1 6 6 C 1.37874 * 120.00070 * 299.99655 * 4 2 1 7 7 N 1.31517 * 119.99838 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00376 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46478 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47043 * 120.00109 * 8 6 4 11 11 H 1.48491 * 109.47109 * 240.00576 * 8 6 4 12 12 N 1.46508 * 109.46969 * 240.00524 * 2 1 3 13 13 C 1.46491 * 119.99689 * 299.99700 * 12 2 1 14 14 C 1.34778 * 119.99981 * 120.00249 * 12 2 1 15 15 O 1.21284 * 120.00016 * 6.33409 * 14 12 2 16 16 C 1.50694 * 119.99750 * 186.34176 * 14 12 2 17 17 N 1.46898 * 110.02148 * 45.98408 * 16 14 12 18 18 C 1.54267 * 110.03278 * 284.54043 * 16 14 12 19 19 C 1.54888 * 104.19658 * 217.10825 * 18 16 14 20 20 C 1.54893 * 102.74845 * 37.94415 * 19 18 16 21 21 C 1.53884 * 110.03192 * 167.37695 * 16 14 12 22 22 H 1.08999 * 109.46752 * 299.99668 * 1 2 3 23 23 H 1.08996 * 109.47101 * 59.99706 * 1 2 3 24 24 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99829 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47517 * 92.39106 * 13 12 2 27 27 H 1.09003 * 109.47277 * 212.38361 * 13 12 2 28 28 H 1.08998 * 109.47379 * 332.38415 * 13 12 2 29 29 H 1.00901 * 111.00390 * 287.85977 * 17 16 14 30 30 H 1.00910 * 110.99932 * 51.80899 * 17 16 14 31 31 H 1.08999 * 110.48635 * 335.78508 * 18 16 14 32 32 H 1.08991 * 110.48459 * 98.43223 * 18 16 14 33 33 H 1.08997 * 110.75549 * 279.62837 * 19 18 16 34 34 H 1.08999 * 110.75518 * 156.25465 * 19 18 16 35 35 H 1.09003 * 110.48070 * 203.37830 * 20 19 18 36 36 H 1.08994 * 110.49036 * 80.73603 * 20 19 18 37 37 H 1.09001 * 110.03144 * 238.57194 * 21 16 14 38 38 H 1.09000 * 110.02932 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1198 4.0079 9 1 3.1485 -2.2859 3.6035 10 1 3.1473 -0.1860 4.8160 11 1 1.1680 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1812 1.0869 -1.8370 16 6 3.1773 -0.6976 -3.3815 17 7 1.9987 -1.3247 -3.9942 18 6 4.2707 -1.7567 -3.1312 19 6 5.1944 -1.6492 -4.3698 20 6 5.2223 -0.1250 -4.6441 21 6 3.7825 0.3399 -4.3435 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7083 1.1606 3.4844 26 1 0.7608 -2.1442 -2.0355 27 1 2.4811 -2.5925 -1.9494 28 1 1.4882 -2.5861 -0.4722 29 1 1.7218 -2.1499 -3.4839 30 1 1.2349 -0.6689 -4.0632 31 1 4.8244 -1.5257 -2.2212 32 1 3.8306 -2.7519 -3.0688 33 1 4.7684 -2.1865 -5.2171 34 1 6.1937 -2.0186 -4.1397 35 1 5.4766 0.0704 -5.6859 36 1 5.9297 0.3695 -3.9785 37 1 3.2020 0.3774 -5.2653 38 1 3.7978 1.3223 -3.8716 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -33.793348 kcal Electronic energy + Delta-G solvation = -18505.654977 eV Core-core repulsion = 15768.968329 eV Total energy + Delta-G solvation = -2736.686648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13552 -37.05172 -35.46326 -33.36945 -32.07337 -29.36316 -28.48362 -27.01608 -26.00142 -25.26516 -22.25709 -20.69063 -19.73837 -18.28179 -16.92100 -16.36531 -15.64105 -15.25752 -15.12790 -14.56997 -14.29370 -14.04374 -13.22085 -13.05586 -12.58963 -12.29962 -11.88677 -11.75802 -11.50523 -11.11669 -11.08321 -10.95401 -10.91540 -10.83559 -10.72976 -10.64975 -10.36570 -10.29133 -10.19935 -9.74330 -9.21205 -8.49497 -8.14855 -7.64724 -6.11021 -4.19144 3.22940 3.26820 3.31630 3.34589 3.87076 4.36111 4.63690 4.69009 4.77195 5.06823 5.20065 5.26502 5.52445 5.57324 5.68897 5.79374 5.83318 5.85084 5.96980 6.05545 6.18051 6.20161 6.29377 6.46956 6.50832 6.68728 6.75840 6.99798 7.16061 7.39045 7.45226 7.51244 7.67486 7.97110 8.16051 8.47770 8.79455 9.00018 9.47529 10.94340 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034213 B = 0.006893 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.200330 B = 4060.945188 C = 4219.074564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.061 0.939 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.070 3.930 14 C 0.477 3.523 15 O -0.546 6.546 16 C 0.101 3.899 17 N -0.834 5.834 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.108 4.108 22 H 0.094 0.906 23 H 0.009 0.991 24 H 0.029 0.971 25 H 0.263 0.737 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.346 0.654 30 H 0.342 0.658 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -6.427 -11.782 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.074 4.074 14 C 0.261 3.739 15 O -0.424 6.424 16 C 0.005 3.995 17 N -0.370 5.370 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.146 4.146 22 H 0.112 0.888 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.584 -5.819 -12.103 13.900 hybrid contribution -0.359 -0.361 1.925 1.991 sum 3.225 -6.180 -10.178 12.337 Atomic orbital electron populations 1.22087 0.98198 0.99358 1.00767 1.18946 0.90750 0.94492 0.80189 0.92074 1.21341 1.31745 1.12989 0.90313 0.92244 1.24905 0.94924 0.94975 0.99017 1.69886 1.36378 1.22638 1.23688 0.86436 0.78616 0.79589 0.82737 1.19817 1.20871 1.20892 1.48226 1.49165 1.11209 1.23710 1.21925 0.98658 0.83966 1.02828 1.21534 0.79212 0.86906 0.86223 1.90612 1.53886 1.20008 1.77851 1.21682 0.92320 0.94944 0.90602 1.59263 1.08771 1.11140 1.57842 1.22458 0.95763 0.97582 0.99052 1.22429 0.98754 0.96559 0.97589 1.22303 0.96880 0.95701 1.00863 1.22137 0.95347 0.98833 0.98273 0.88788 0.97171 0.95178 0.92710 0.93899 0.92060 0.89766 0.83593 0.84476 0.90818 0.90764 0.91066 0.91837 0.91785 0.91669 0.90893 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 3 H 0.06 1.83 6.92 -51.93 -0.36 1.47 16 4 C -0.53 -14.21 7.97 -34.44 -0.27 -14.48 16 5 H 0.06 1.59 7.37 -52.49 -0.39 1.20 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.59 -12.43 2.75 -175.27 -0.48 -12.91 16 13 C 0.07 1.15 7.64 59.84 0.46 1.61 16 14 C 0.48 9.90 6.42 -10.99 -0.07 9.83 16 15 O -0.55 -13.66 14.65 5.55 0.08 -13.58 16 16 C 0.10 1.57 0.81 -131.63 -0.11 1.47 16 17 N -0.83 -11.09 8.49 0.72 0.01 -11.09 16 18 C -0.11 -1.54 5.05 -25.07 -0.13 -1.67 16 19 C -0.12 -1.36 6.91 -24.74 -0.17 -1.54 16 20 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 21 C -0.11 -1.61 6.17 -25.61 -0.16 -1.76 16 22 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.04 0.60 7.06 -51.93 -0.37 0.24 16 27 H 0.06 0.85 4.04 -51.93 -0.21 0.64 16 28 H 0.08 1.48 7.05 -51.93 -0.37 1.12 16 29 H 0.35 4.24 4.76 -39.29 -0.19 4.05 16 30 H 0.34 4.61 8.94 -39.29 -0.35 4.26 16 31 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 32 H 0.07 0.92 6.38 -51.93 -0.33 0.59 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.08 1.49 6.48 -51.93 -0.34 1.15 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -30.40 290.29 -6.65 -37.06 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.68 Total: 8.00 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.56 Total: -3.33 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.15 Total: -48.56 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.40 -6.65 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.263 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds