Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46989 * 2 1 4 4 C 1.50694 * 109.47188 * 120.00482 * 2 1 3 5 5 H 1.08001 * 120.00207 * 120.00580 * 4 2 1 6 6 C 1.37874 * 120.00070 * 299.99655 * 4 2 1 7 7 N 1.31517 * 119.99838 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00376 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46478 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47043 * 120.00109 * 8 6 4 11 11 H 1.48491 * 109.47109 * 240.00576 * 8 6 4 12 12 N 1.46508 * 109.46969 * 240.00524 * 2 1 3 13 13 C 1.46491 * 119.99689 * 299.99700 * 12 2 1 14 14 C 1.34778 * 119.99981 * 120.00249 * 12 2 1 15 15 O 1.21284 * 120.00016 * 6.33409 * 14 12 2 16 16 C 1.50694 * 119.99750 * 186.34176 * 14 12 2 17 17 N 1.46898 * 110.02148 * 45.98408 * 16 14 12 18 18 C 1.54267 * 110.03278 * 284.54043 * 16 14 12 19 19 C 1.54888 * 104.19658 * 217.10825 * 18 16 14 20 20 C 1.54893 * 102.74845 * 37.94415 * 19 18 16 21 21 C 1.53884 * 110.03192 * 167.37695 * 16 14 12 22 22 H 1.08999 * 109.46752 * 299.99668 * 1 2 3 23 23 H 1.08996 * 109.47101 * 59.99706 * 1 2 3 24 24 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99829 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47517 * 92.39106 * 13 12 2 27 27 H 1.09003 * 109.47277 * 212.38361 * 13 12 2 28 28 H 1.08998 * 109.47379 * 332.38415 * 13 12 2 29 29 H 1.00901 * 111.00390 * 287.85977 * 17 16 14 30 30 H 1.00910 * 110.99932 * 51.80899 * 17 16 14 31 31 H 1.08999 * 110.48635 * 335.78508 * 18 16 14 32 32 H 1.08991 * 110.48459 * 98.43223 * 18 16 14 33 33 H 1.08997 * 110.75549 * 279.62837 * 19 18 16 34 34 H 1.08999 * 110.75518 * 156.25465 * 19 18 16 35 35 H 1.09003 * 110.48070 * 203.37830 * 20 19 18 36 36 H 1.08994 * 110.49036 * 80.73603 * 20 19 18 37 37 H 1.09001 * 110.03144 * 238.57194 * 21 16 14 38 38 H 1.09000 * 110.02932 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1198 4.0079 9 1 3.1485 -2.2859 3.6035 10 1 3.1473 -0.1860 4.8160 11 1 1.1680 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1812 1.0869 -1.8370 16 6 3.1773 -0.6976 -3.3815 17 7 1.9987 -1.3247 -3.9942 18 6 4.2707 -1.7567 -3.1312 19 6 5.1944 -1.6492 -4.3698 20 6 5.2223 -0.1250 -4.6441 21 6 3.7825 0.3399 -4.3435 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7083 1.1606 3.4844 26 1 0.7608 -2.1442 -2.0355 27 1 2.4811 -2.5925 -1.9494 28 1 1.4882 -2.5861 -0.4722 29 1 1.7218 -2.1499 -3.4839 30 1 1.2349 -0.6689 -4.0632 31 1 4.8244 -1.5257 -2.2212 32 1 3.8306 -2.7519 -3.0688 33 1 4.7684 -2.1865 -5.2171 34 1 6.1937 -2.0186 -4.1397 35 1 5.4766 0.0704 -5.6859 36 1 5.9297 0.3695 -3.9785 37 1 3.2020 0.3774 -5.2653 38 1 3.7978 1.3223 -3.8716 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -55.104168 kcal Electronic energy + Delta-G solvation = -18506.579084 eV Core-core repulsion = 15768.968329 eV Total energy + Delta-G solvation = -2737.610754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60883 -38.45039 -37.24599 -35.09169 -33.53288 -31.15641 -29.65960 -28.31789 -27.37421 -27.32737 -23.94046 -21.71754 -21.35584 -19.76584 -18.56280 -18.13534 -17.36160 -16.53420 -16.45094 -16.21539 -15.92258 -15.28034 -14.86004 -14.42077 -14.21903 -13.76067 -13.61979 -13.19361 -13.10531 -12.87621 -12.79326 -12.61586 -12.27670 -12.21019 -12.16596 -12.00015 -11.92243 -11.79494 -11.38776 -11.23901 -11.22221 -10.59087 -9.54241 -9.39095 -8.19202 -6.36247 1.37210 1.39152 1.50266 1.68056 2.23966 2.43023 3.08670 3.42966 3.53513 3.63579 3.82132 4.13038 4.34864 4.48530 4.53094 4.55064 4.69928 4.71041 4.81330 4.82711 4.87675 4.95562 5.00887 5.09632 5.13655 5.23193 5.29305 5.41998 5.50900 5.52834 5.61685 5.94677 6.05357 6.11867 6.40402 6.72017 6.76913 7.26005 7.41615 8.85288 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034213 B = 0.006893 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.200330 B = 4060.945188 C = 4219.074564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.003 0.997 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.596 5.596 13 C 0.066 3.934 14 C 0.465 3.535 15 O -0.602 6.602 16 C 0.112 3.888 17 N -0.817 5.817 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.066 0.934 23 H 0.020 0.980 24 H 0.048 0.952 25 H 0.265 0.735 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.354 0.646 30 H 0.344 0.656 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -9.175 -13.154 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.021 0.979 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.327 5.327 13 C -0.076 4.076 14 C 0.251 3.749 15 O -0.483 6.483 16 C 0.016 3.984 17 N -0.353 5.353 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.156 4.156 21 C -0.148 4.148 22 H 0.085 0.915 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.886 -8.619 -13.503 16.484 hybrid contribution -0.474 0.547 2.326 2.436 sum 3.412 -8.072 -11.176 14.202 Atomic orbital electron populations 1.21857 0.96891 1.00208 0.99930 1.18538 0.91673 0.92001 0.82021 0.97911 1.21597 1.31853 1.13046 0.91207 0.92172 1.25763 0.95045 0.95640 1.02122 1.70029 1.37323 1.23931 1.24420 0.85394 0.78280 0.78470 0.78799 1.18852 1.21215 1.19750 1.48212 1.49052 1.12976 1.22414 1.22198 1.01120 0.81082 1.03227 1.22720 0.78060 0.86406 0.87677 1.90583 1.55793 1.22639 1.79241 1.21675 0.93724 0.95423 0.87615 1.59284 1.08171 1.11099 1.56723 1.22506 0.95467 0.97784 0.99297 1.22420 0.99247 0.95725 0.96850 1.22323 0.94778 0.96474 1.02075 1.22148 0.97396 0.96995 0.98255 0.91485 0.96115 0.93253 0.92606 0.90876 0.89219 0.90853 0.82640 0.84334 0.93221 0.88506 0.89179 0.90147 0.89292 0.93032 0.89328 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.97 71.98 0.65 -5.64 16 2 C 0.26 13.70 2.63 44.24 0.12 13.82 16 3 H 0.00 0.19 6.92 -2.39 -0.02 0.17 16 4 C -0.54 -29.62 7.97 25.60 0.20 -29.41 16 5 H 0.06 3.22 7.37 -2.91 -0.02 3.20 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 9 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.60 -25.14 2.75 -826.81 -2.28 -27.42 16 13 C 0.07 2.02 7.64 127.77 0.98 2.99 16 14 C 0.46 19.66 6.42 87.65 0.56 20.23 16 15 O -0.60 -31.87 14.65 -3.04 -0.04 -31.91 16 16 C 0.11 3.35 0.81 3.51 0.00 3.35 16 17 N -0.82 -19.30 8.49 -151.65 -1.29 -20.58 16 18 C -0.11 -2.86 5.05 31.67 0.16 -2.70 16 19 C -0.11 -2.10 6.91 31.89 0.22 -1.88 16 20 C -0.12 -2.76 6.83 31.67 0.22 -2.55 16 21 C -0.11 -3.17 6.17 31.32 0.19 -2.98 16 22 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.07 1.81 7.06 -2.39 -0.02 1.79 16 27 H 0.09 2.21 4.04 -2.39 -0.01 2.20 16 28 H 0.07 2.44 7.05 -2.39 -0.02 2.43 16 29 H 0.35 7.31 4.76 -89.69 -0.43 6.88 16 30 H 0.34 8.40 8.94 -89.69 -0.80 7.60 16 31 H 0.05 1.51 7.85 -2.39 -0.02 1.49 16 32 H 0.10 2.00 6.38 -2.39 -0.02 1.98 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 38 H 0.05 1.83 6.48 -2.39 -0.02 1.82 16 Total: -1.00 -69.51 290.29 2.25 -67.26 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.16 Total: 24.12 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 3.75 Total: -3.56 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -3.32 Total: -101.27 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.04 Total: -31.91 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.51 2.25 -67.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.153 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds