Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47176 * 2 1 4 4 C 1.50705 * 109.47189 * 240.00108 * 2 1 3 5 5 H 1.08001 * 119.99571 * 239.99958 * 4 2 1 6 6 C 1.37870 * 119.99721 * 60.00023 * 4 2 1 7 7 N 1.31509 * 120.00336 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99602 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47336 * 60.00103 * 8 6 4 10 10 H 1.48508 * 109.46932 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47510 * 299.99983 * 8 6 4 12 12 N 1.46503 * 109.47275 * 120.00148 * 2 1 3 13 13 C 1.46502 * 119.99848 * 59.99939 * 12 2 1 14 14 C 1.34773 * 120.00284 * 239.99976 * 12 2 1 15 15 O 1.21284 * 119.99929 * 5.73908 * 14 12 2 16 16 C 1.50694 * 120.00485 * 185.73491 * 14 12 2 17 17 N 1.46911 * 110.01428 * 46.91954 * 16 14 12 18 18 C 1.54263 * 110.07574 * 168.33284 * 16 14 12 19 19 C 1.54889 * 104.19462 * 95.69974 * 18 16 14 20 20 C 1.54894 * 102.74853 * 37.94469 * 19 18 16 21 21 C 1.53876 * 110.03512 * 285.52883 * 16 14 12 22 22 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47367 * 299.99950 * 1 2 3 24 24 H 1.08998 * 109.47540 * 60.00023 * 1 2 3 25 25 H 0.97004 * 119.99929 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46721 * 264.46382 * 13 12 2 27 27 H 1.09001 * 109.47302 * 24.46134 * 13 12 2 28 28 H 1.08997 * 109.47178 * 144.46778 * 13 12 2 29 29 H 1.00899 * 111.00091 * 61.30271 * 17 16 14 30 30 H 1.00896 * 110.99767 * 185.25534 * 17 16 14 31 31 H 1.09000 * 110.49156 * 214.38034 * 18 16 14 32 32 H 1.09002 * 110.48801 * 337.02636 * 18 16 14 33 33 H 1.08998 * 110.75851 * 279.62559 * 19 18 16 34 34 H 1.09004 * 110.75516 * 156.25428 * 19 18 16 35 35 H 1.08994 * 110.48708 * 203.37816 * 20 19 18 36 36 H 1.09002 * 110.48672 * 80.73429 * 20 19 18 37 37 H 1.08999 * 110.03199 * 359.94537 * 21 16 14 38 38 H 1.09000 * 110.02925 * 121.38026 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8062 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0007 1.1514 1.9469 16 6 3.4017 -0.7784 3.2449 17 7 4.0123 -2.0300 2.7771 18 6 4.4631 0.1007 3.9378 19 6 3.7002 0.7630 5.1118 20 6 2.7676 -0.3740 5.5982 21 6 2.3236 -1.0802 4.3006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7089 1.1614 -3.4844 26 1 0.7934 -2.1449 2.0813 27 1 1.4335 -2.5718 0.4762 28 1 2.5028 -2.6065 1.8988 29 1 4.7522 -1.8463 2.1160 30 1 4.3490 -2.5801 3.5530 31 1 5.2816 -0.5137 4.3130 32 1 4.8382 0.8591 3.2505 33 1 3.1191 1.6165 4.7624 34 1 4.3900 1.0612 5.9014 35 1 1.9054 0.0378 6.1226 36 1 3.3122 -1.0652 6.2415 37 1 1.3605 -0.6887 3.9732 38 1 2.2536 -2.1554 4.4658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -37.130313 kcal Electronic energy + Delta-G solvation = -18512.333681 eV Core-core repulsion = 15775.502332 eV Total energy + Delta-G solvation = -2736.831349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98244 -37.05165 -35.15899 -33.13284 -32.20585 -29.31663 -28.49693 -26.67216 -25.66113 -25.13031 -22.39840 -20.58055 -19.87874 -17.93011 -16.71666 -16.25482 -15.85359 -15.11993 -14.79372 -14.44383 -14.23812 -13.89213 -13.16400 -12.86539 -12.49327 -12.36448 -12.01674 -11.53535 -11.39546 -11.24597 -11.04470 -10.99963 -10.88950 -10.82941 -10.78426 -10.57993 -10.50859 -10.16330 -10.09200 -9.14752 -8.90377 -8.39468 -8.24528 -7.32869 -6.00591 -4.08015 3.31701 3.35876 3.36870 3.43294 4.09649 4.44096 4.45121 4.71939 4.80407 5.07440 5.29912 5.38349 5.48991 5.54136 5.64539 5.71590 5.92924 5.94972 6.07473 6.23070 6.31870 6.36913 6.43747 6.47093 6.81957 6.88562 6.97589 7.13934 7.17519 7.42033 7.60404 7.64955 7.81395 8.11526 8.29628 8.72377 8.91515 9.20337 9.58422 11.04703 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038258 B = 0.006774 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.699543 B = 4132.734840 C = 4233.649581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.574 5.574 13 C 0.053 3.947 14 C 0.515 3.485 15 O -0.560 6.560 16 C 0.098 3.902 17 N -0.821 5.821 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.109 4.109 22 H 0.029 0.971 23 H 0.009 0.991 24 H 0.091 0.909 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.348 0.652 30 H 0.340 0.660 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -6.023 13.661 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.303 5.303 13 C -0.091 4.091 14 C 0.300 3.700 15 O -0.439 6.439 16 C 0.002 3.998 17 N -0.352 5.352 18 C -0.180 4.180 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.147 4.147 22 H 0.048 0.952 23 H 0.028 0.972 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.395 -5.467 13.098 14.593 hybrid contribution 1.010 -0.198 -0.558 1.171 sum 4.406 -5.665 12.539 14.448 Atomic orbital electron populations 1.22060 0.98430 0.99300 1.00543 1.18917 0.90852 0.94368 0.80338 0.92358 1.21321 1.31574 1.12875 0.90260 0.92180 1.24903 0.95064 0.95023 0.98934 1.69881 1.36540 1.22700 1.23709 0.86556 0.79156 0.79596 0.82042 1.20253 1.21257 1.20321 1.48041 1.47746 1.12107 1.22410 1.22374 1.01627 0.83370 1.01741 1.19995 0.79903 0.87096 0.83002 1.90625 1.62618 1.15531 1.75117 1.21699 0.94893 0.89173 0.93994 1.58920 1.38453 1.18155 1.19645 1.22996 0.97046 0.99861 0.98145 1.22422 0.98111 0.98268 0.96997 1.22393 0.99387 0.97574 0.96906 1.22185 0.98037 1.01177 0.93332 0.95215 0.97227 0.89024 0.92741 0.95731 0.91528 0.86624 0.83793 0.84600 0.91851 0.89858 0.90778 0.91884 0.91596 0.91793 0.91038 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.97 37.15 0.33 -3.32 16 2 C 0.26 6.81 2.62 -69.08 -0.18 6.63 16 3 H 0.06 1.80 6.92 -51.93 -0.36 1.44 16 4 C -0.52 -14.50 7.95 -34.44 -0.27 -14.77 16 5 H 0.06 1.64 7.43 -52.49 -0.39 1.25 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.57 -12.78 2.75 -175.26 -0.48 -13.26 16 13 C 0.05 0.98 8.43 59.85 0.50 1.49 16 14 C 0.52 10.92 6.39 -10.99 -0.07 10.85 16 15 O -0.56 -14.04 14.89 5.55 0.08 -13.96 16 16 C 0.10 1.48 0.67 -131.63 -0.09 1.39 16 17 N -0.82 -10.28 5.62 0.72 0.00 -10.27 16 18 C -0.14 -1.95 5.77 -25.07 -0.14 -2.09 16 19 C -0.12 -1.52 6.91 -24.74 -0.17 -1.69 16 20 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 21 C -0.11 -1.43 5.34 -25.61 -0.14 -1.57 16 22 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 1.33 7.11 -51.93 -0.37 0.96 16 28 H 0.12 1.86 4.57 -51.93 -0.24 1.63 16 29 H 0.35 4.52 9.02 -39.29 -0.35 4.16 16 30 H 0.34 3.19 8.92 -39.29 -0.35 2.84 16 31 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.08 1.39 7.04 -51.93 -0.37 1.02 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 38 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -31.29 296.14 -6.86 -38.14 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.04 Total: 6.66 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.49 Total: -3.00 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.15 Total: -48.75 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.29 -6.86 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.012 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds