Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47176 * 2 1 4 4 C 1.50705 * 109.47189 * 240.00108 * 2 1 3 5 5 H 1.08001 * 119.99571 * 239.99958 * 4 2 1 6 6 C 1.37870 * 119.99721 * 60.00023 * 4 2 1 7 7 N 1.31509 * 120.00336 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99602 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47336 * 60.00103 * 8 6 4 10 10 H 1.48508 * 109.46932 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47510 * 299.99983 * 8 6 4 12 12 N 1.46503 * 109.47275 * 120.00148 * 2 1 3 13 13 C 1.46502 * 119.99848 * 59.99939 * 12 2 1 14 14 C 1.34773 * 120.00284 * 239.99976 * 12 2 1 15 15 O 1.21284 * 119.99929 * 5.73908 * 14 12 2 16 16 C 1.50694 * 120.00485 * 185.73491 * 14 12 2 17 17 N 1.46911 * 110.01428 * 46.91954 * 16 14 12 18 18 C 1.54263 * 110.07574 * 168.33284 * 16 14 12 19 19 C 1.54889 * 104.19462 * 95.69974 * 18 16 14 20 20 C 1.54894 * 102.74853 * 37.94469 * 19 18 16 21 21 C 1.53876 * 110.03512 * 285.52883 * 16 14 12 22 22 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47367 * 299.99950 * 1 2 3 24 24 H 1.08998 * 109.47540 * 60.00023 * 1 2 3 25 25 H 0.97004 * 119.99929 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46721 * 264.46382 * 13 12 2 27 27 H 1.09001 * 109.47302 * 24.46134 * 13 12 2 28 28 H 1.08997 * 109.47178 * 144.46778 * 13 12 2 29 29 H 1.00899 * 111.00091 * 61.30271 * 17 16 14 30 30 H 1.00896 * 110.99767 * 185.25534 * 17 16 14 31 31 H 1.09000 * 110.49156 * 214.38034 * 18 16 14 32 32 H 1.09002 * 110.48801 * 337.02636 * 18 16 14 33 33 H 1.08998 * 110.75851 * 279.62559 * 19 18 16 34 34 H 1.09004 * 110.75516 * 156.25428 * 19 18 16 35 35 H 1.08994 * 110.48708 * 203.37816 * 20 19 18 36 36 H 1.09002 * 110.48672 * 80.73429 * 20 19 18 37 37 H 1.08999 * 110.03199 * 359.94537 * 21 16 14 38 38 H 1.09000 * 110.02925 * 121.38026 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2204 11 1 3.8062 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0007 1.1514 1.9469 16 6 3.4017 -0.7784 3.2449 17 7 4.0123 -2.0300 2.7771 18 6 4.4631 0.1007 3.9378 19 6 3.7002 0.7630 5.1118 20 6 2.7676 -0.3740 5.5982 21 6 2.3236 -1.0802 4.3006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7089 1.1614 -3.4844 26 1 0.7934 -2.1449 2.0813 27 1 1.4335 -2.5718 0.4762 28 1 2.5028 -2.6065 1.8988 29 1 4.7522 -1.8463 2.1160 30 1 4.3490 -2.5801 3.5530 31 1 5.2816 -0.5137 4.3130 32 1 4.8382 0.8591 3.2505 33 1 3.1191 1.6165 4.7624 34 1 4.3900 1.0612 5.9014 35 1 1.9054 0.0378 6.1226 36 1 3.3122 -1.0652 6.2415 37 1 1.3605 -0.6887 3.9732 38 1 2.2536 -2.1554 4.4658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -59.170816 kcal Electronic energy + Delta-G solvation = -18513.289429 eV Core-core repulsion = 15775.502332 eV Total energy + Delta-G solvation = -2737.787097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44338 -38.49006 -37.03022 -34.87168 -33.60071 -31.21512 -29.61315 -27.91711 -27.34177 -27.15131 -24.03032 -21.63024 -21.50721 -19.45195 -18.43565 -18.00372 -17.41300 -16.72207 -16.23187 -15.94147 -15.47740 -15.44570 -14.65807 -14.35628 -14.11660 -13.85104 -13.68304 -13.29779 -12.96685 -12.77024 -12.73694 -12.63577 -12.43901 -12.20587 -12.15695 -12.10670 -11.93932 -11.89142 -11.46592 -11.21284 -10.63119 -10.46970 -9.57249 -9.05818 -8.14235 -6.31185 1.40779 1.43731 1.51294 1.79416 2.35807 2.55580 3.12946 3.36151 3.58613 3.72097 3.88137 4.26419 4.47334 4.49546 4.57069 4.70563 4.76249 4.80602 4.84130 4.93307 4.96516 5.02976 5.07900 5.11732 5.19900 5.26804 5.45570 5.46654 5.48141 5.61276 5.73620 6.00133 6.10364 6.17904 6.58083 6.77325 6.96265 7.33452 7.54154 8.90218 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038258 B = 0.006774 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.699543 B = 4132.734840 C = 4233.649581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.259 3.741 3 H 0.002 0.998 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.582 5.582 13 C 0.055 3.945 14 C 0.501 3.499 15 O -0.611 6.611 16 C 0.110 3.890 17 N -0.816 5.816 18 C -0.138 4.138 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.107 4.107 22 H 0.043 0.957 23 H 0.014 0.986 24 H 0.067 0.933 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.146 0.854 29 H 0.348 0.652 30 H 0.366 0.634 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -8.850 15.236 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.310 5.310 13 C -0.087 4.087 14 C 0.289 3.711 15 O -0.493 6.493 16 C 0.014 3.986 17 N -0.350 5.350 18 C -0.178 4.178 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.146 4.146 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.366 -8.343 14.714 17.469 hybrid contribution 0.713 0.739 -1.029 1.454 sum 5.079 -7.603 13.685 16.459 Atomic orbital electron populations 1.21854 0.97689 0.99764 0.99587 1.18522 0.91405 0.92033 0.82413 0.97965 1.21560 1.31824 1.13006 0.91025 0.91925 1.25805 0.95104 0.95681 1.02195 1.70034 1.37481 1.24050 1.24456 0.85452 0.78479 0.78902 0.77831 1.18703 1.20912 1.20011 1.48060 1.48057 1.13461 1.21430 1.22599 1.03590 0.81088 1.01443 1.21190 0.78999 0.86931 0.83997 1.90594 1.64021 1.18161 1.76574 1.21517 0.95788 0.89767 0.91494 1.58692 1.38685 1.16904 1.20749 1.23004 0.97741 0.99321 0.97733 1.22432 0.98568 0.97808 0.97238 1.22389 0.99513 0.97126 0.96161 1.22222 0.95853 1.03082 0.93407 0.93798 0.96700 0.91409 0.92675 0.94127 0.93110 0.83739 0.83872 0.81681 0.88120 0.93622 0.94303 0.89306 0.90999 0.88340 0.93690 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 8.97 71.98 0.65 -6.15 16 2 C 0.26 14.35 2.62 44.24 0.12 14.46 16 3 H 0.00 0.16 6.92 -2.39 -0.02 0.14 16 4 C -0.54 -30.39 7.95 25.60 0.20 -30.19 16 5 H 0.06 3.44 7.43 -2.91 -0.02 3.41 16 6 C 0.01 0.64 5.30 84.65 0.45 1.08 16 7 N -0.92 -55.09 11.32 21.44 0.24 -54.85 16 8 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.58 -26.35 2.75 -826.80 -2.28 -28.63 16 13 C 0.06 1.97 8.43 127.77 1.08 3.05 16 14 C 0.50 21.78 6.39 87.66 0.56 22.34 16 15 O -0.61 -32.60 14.89 -3.04 -0.05 -32.64 16 16 C 0.11 3.15 0.67 3.50 0.00 3.15 16 17 N -0.82 -17.90 5.62 -151.64 -0.85 -18.75 16 18 C -0.14 -3.62 5.77 31.67 0.18 -3.44 16 19 C -0.12 -2.90 6.91 31.89 0.22 -2.68 16 20 C -0.11 -2.14 6.83 31.67 0.22 -1.92 16 21 C -0.11 -2.52 5.34 31.32 0.17 -2.35 16 22 H 0.04 2.10 7.67 -2.39 -0.02 2.08 16 23 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.97 7.11 -2.39 -0.02 1.96 16 28 H 0.15 4.27 4.57 -2.39 -0.01 4.26 16 29 H 0.35 8.18 9.02 -89.69 -0.81 7.37 16 30 H 0.37 5.07 8.92 -89.70 -0.80 4.27 16 31 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 32 H 0.04 1.55 7.04 -2.39 -0.02 1.53 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.30 7.67 -2.39 -0.02 1.28 16 38 H 0.11 1.91 7.87 -2.39 -0.02 1.89 16 Total: -1.00 -72.59 296.14 2.39 -70.20 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.55 Total: 21.12 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 3.84 Total: -2.64 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -2.89 Total: -102.23 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.59 2.39 -70.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.028 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds