Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31518 * 119.99963 * 198.29625 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.53001 * 109.46850 * 189.99621 * 14 12 2 16 16 C 1.50709 * 109.46991 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99946 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99698 * 179.97438 * 18 16 15 20 20 C 1.53002 * 117.50086 * 223.74498 * 19 18 16 21 21 C 1.53001 * 117.49840 * 155.08768 * 19 18 16 22 22 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 23 23 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 24 24 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 25 25 H 0.97000 * 119.99730 * 355.23455 * 7 6 4 26 26 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 27 27 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 28 28 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 29 29 H 1.09003 * 109.46794 * 309.99288 * 14 12 2 30 30 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 31 31 H 1.08997 * 109.47422 * 299.99753 * 15 14 12 32 32 H 1.08999 * 109.47376 * 59.99819 * 15 14 12 33 33 H 0.96999 * 119.99953 * 0.02562 * 18 16 15 34 34 H 1.09001 * 115.55248 * 9.42163 * 19 18 16 35 35 H 1.09001 * 117.49636 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.50005 * 145.01545 * 20 19 18 37 37 H 1.08996 * 117.50192 * 214.98201 * 21 19 18 38 38 H 1.09005 * 117.49805 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9004 -0.9342 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3788 -0.5660 3.6186 16 6 1.9986 0.1850 4.8687 17 8 1.2199 1.1127 4.8056 18 7 2.5231 -0.1750 6.0568 19 6 2.1539 0.5554 7.2719 20 6 3.2754 0.9136 8.2491 21 6 2.2717 -0.1860 8.6051 22 1 -0.3633 -1.0226 -0.1017 23 1 -0.3634 0.4232 0.9364 24 1 -0.3633 0.5994 -0.8348 25 1 2.2094 -1.8499 -3.4665 26 1 1.8763 -2.6150 0.3649 27 1 1.9060 -2.5657 2.1437 28 1 0.4384 -2.0742 1.2640 29 1 1.9297 1.0872 2.3124 30 1 0.5721 -0.0344 2.5726 31 1 2.0978 -1.6139 3.7242 32 1 3.4552 -0.4924 3.4641 33 1 3.1455 -0.9172 6.1073 34 1 1.3355 1.2670 7.1624 35 1 4.2880 0.6061 7.9878 36 1 3.1947 1.8606 8.7827 37 1 1.5311 0.0381 9.3727 38 1 2.6235 -1.2173 8.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = -7.468001 kcal Electronic energy + Delta-G solvation = -17238.818832 eV Core-core repulsion = 14503.273737 eV Total energy + Delta-G solvation = -2735.545095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90171 -37.68822 -36.98595 -33.19085 -32.81506 -31.03606 -28.73613 -25.83098 -24.88048 -23.01464 -22.73241 -21.41518 -20.37334 -19.01926 -17.26975 -17.21450 -16.65078 -15.59285 -15.04642 -14.85050 -14.02720 -13.98156 -13.73950 -13.27221 -12.99938 -12.85407 -12.22413 -11.93991 -11.69450 -11.63840 -11.52202 -11.41603 -11.15485 -10.85544 -10.67899 -10.50353 -10.22848 -9.84702 -9.77680 -9.64813 -8.95150 -8.89337 -8.10728 -7.31217 -6.41563 -3.98997 2.56645 2.93168 3.42427 3.48420 3.61638 3.64620 4.45965 4.53258 4.61575 4.65573 4.66714 5.04475 5.26606 5.27022 5.31544 5.41500 5.51061 5.66782 5.71958 5.82104 6.02906 6.15703 6.28165 6.33599 6.38250 6.46491 6.51754 6.73084 6.74969 7.04434 7.32071 7.35758 7.75091 8.07008 8.17068 8.36390 8.48995 9.01815 9.67592 10.99544 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049697 B = 0.004416 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.277959 B = 6338.582643 C = 6588.784168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.187 3.813 3 H 0.032 0.968 4 C -0.587 4.587 5 H 0.064 0.936 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.282 1.282 12 N -0.528 5.528 13 C 0.033 3.967 14 C 0.066 3.934 15 C -0.135 4.135 16 C 0.520 3.480 17 O -0.537 6.537 18 N -0.709 5.709 19 C 0.081 3.919 20 C -0.195 4.195 21 C -0.192 4.192 22 H 0.048 0.952 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.266 0.734 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.402 0.598 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 0.159 21.448 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.625 4.625 5 H 0.082 0.918 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.872 3.128 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.251 5.251 13 C -0.116 4.116 14 C -0.064 4.064 15 C -0.176 4.176 16 C 0.307 3.693 17 O -0.412 6.412 18 N -0.360 5.360 19 C -0.025 4.025 20 C -0.234 4.234 21 C -0.230 4.230 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.134 1.970 20.205 20.332 hybrid contribution -0.047 -1.610 1.351 2.102 sum 1.087 0.360 21.556 21.586 Atomic orbital electron populations 1.22866 1.01321 1.01092 0.99376 1.19622 0.89254 0.94717 0.88441 0.95062 1.21956 1.39899 1.10250 0.90399 0.91826 1.25671 0.94708 1.04997 0.92109 1.70876 1.42487 1.09379 1.31554 0.84074 0.77102 0.75690 0.75914 1.21216 1.20188 1.20871 1.62251 1.59311 1.02008 1.01529 1.22285 0.97157 0.91061 1.01082 1.21798 0.97062 0.98371 0.89120 1.21705 1.03655 1.00411 0.91800 1.20992 0.79760 0.83919 0.84624 1.90693 1.34594 1.29522 1.86420 1.45484 1.48490 1.35789 1.06274 1.21581 1.00527 0.99227 0.81170 1.23432 0.95938 1.00197 1.03830 1.23379 1.03071 0.97756 0.98805 0.93283 0.95630 0.92431 0.92347 0.90640 0.93816 0.96341 0.90808 0.94675 0.88956 0.88066 0.76403 0.84579 0.88480 0.88070 0.87981 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.30 8.12 37.15 0.30 -4.00 16 2 C 0.19 4.56 1.93 -68.87 -0.13 4.43 16 3 H 0.03 0.79 6.67 -51.93 -0.35 0.44 16 4 C -0.59 -16.46 8.31 -34.44 -0.29 -16.75 16 5 H 0.06 1.91 6.78 -52.49 -0.36 1.56 16 6 C 0.03 0.87 5.34 -17.82 -0.10 0.77 16 7 N -0.91 -27.94 13.70 55.43 0.76 -27.18 16 8 Si 1.04 25.57 26.46 -169.99 -4.50 21.07 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.30 5.53 56.52 0.31 -5.99 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.53 -11.10 4.74 -236.29 -1.12 -12.22 16 13 C 0.03 0.63 8.70 60.07 0.52 1.15 16 14 C 0.07 1.19 3.70 -3.82 -0.01 1.18 16 15 C -0.14 -1.85 5.63 -27.88 -0.16 -2.01 16 16 C 0.52 7.20 7.83 -10.98 -0.09 7.12 16 17 O -0.54 -9.57 15.55 5.56 0.09 -9.49 16 18 N -0.71 -7.23 5.57 -53.80 -0.30 -7.53 16 19 C 0.08 0.77 6.43 -67.93 -0.44 0.34 16 20 C -0.20 -1.43 10.46 -26.69 -0.28 -1.71 16 21 C -0.19 -1.32 10.46 -26.69 -0.28 -1.60 16 22 H 0.05 1.12 6.71 -51.93 -0.35 0.78 16 23 H 0.02 0.53 6.49 -51.93 -0.34 0.19 16 24 H 0.06 1.35 4.88 -51.93 -0.25 1.10 16 25 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 26 H 0.07 1.62 6.43 -51.93 -0.33 1.28 16 27 H 0.04 0.68 6.30 -51.92 -0.33 0.36 16 28 H 0.02 0.35 6.41 -51.93 -0.33 0.02 16 29 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 30 H 0.04 0.67 6.77 -51.93 -0.35 0.32 16 31 H 0.09 1.11 6.47 -51.93 -0.34 0.78 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.40 2.95 8.83 -40.82 -0.36 2.58 16 34 H 0.14 1.52 7.40 -51.93 -0.38 1.14 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -32.44 300.19 -7.33 -39.77 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.84 Total: 2.14 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.94 Total: -11.08 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.66 Total: -46.93 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -4.50 Total: 21.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.44 -7.33 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.298 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds