Wall clock time and date at job start Mon Mar 30 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31518 * 119.99963 * 198.29625 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.53001 * 109.46850 * 189.99621 * 14 12 2 16 16 C 1.50709 * 109.46991 * 179.97438 * 15 14 12 17 17 O 1.21282 * 119.99946 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99698 * 179.97438 * 18 16 15 20 20 C 1.53002 * 117.50086 * 223.74498 * 19 18 16 21 21 C 1.53001 * 117.49840 * 155.08768 * 19 18 16 22 22 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 23 23 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 24 24 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 25 25 H 0.97000 * 119.99730 * 355.23455 * 7 6 4 26 26 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 27 27 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 28 28 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 29 29 H 1.09003 * 109.46794 * 309.99288 * 14 12 2 30 30 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 31 31 H 1.08997 * 109.47422 * 299.99753 * 15 14 12 32 32 H 1.08999 * 109.47376 * 59.99819 * 15 14 12 33 33 H 0.96999 * 119.99953 * 0.02562 * 18 16 15 34 34 H 1.09001 * 115.55248 * 9.42163 * 19 18 16 35 35 H 1.09001 * 117.49636 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.50005 * 145.01545 * 20 19 18 37 37 H 1.08996 * 117.50192 * 214.98201 * 21 19 18 38 38 H 1.09005 * 117.49805 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9004 -0.9342 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3788 -0.5660 3.6186 16 6 1.9986 0.1850 4.8687 17 8 1.2199 1.1127 4.8056 18 7 2.5231 -0.1750 6.0568 19 6 2.1539 0.5554 7.2719 20 6 3.2754 0.9136 8.2491 21 6 2.2717 -0.1860 8.6051 22 1 -0.3633 -1.0226 -0.1017 23 1 -0.3634 0.4232 0.9364 24 1 -0.3633 0.5994 -0.8348 25 1 2.2094 -1.8499 -3.4665 26 1 1.8763 -2.6150 0.3649 27 1 1.9060 -2.5657 2.1437 28 1 0.4384 -2.0742 1.2640 29 1 1.9297 1.0872 2.3124 30 1 0.5721 -0.0344 2.5726 31 1 2.0978 -1.6139 3.7242 32 1 3.4552 -0.4924 3.4641 33 1 3.1455 -0.9172 6.1073 34 1 1.3355 1.2670 7.1624 35 1 4.2880 0.6061 7.9878 36 1 3.1947 1.8606 8.7827 37 1 1.5311 0.0381 9.3727 38 1 2.6235 -1.2173 8.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:55 Heat of formation + Delta-G solvation = -32.086032 kcal Electronic energy + Delta-G solvation = -17239.886350 eV Core-core repulsion = 14503.273737 eV Total energy + Delta-G solvation = -2736.612613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94482 -39.15026 -37.98070 -35.02487 -33.95998 -32.64918 -30.37133 -27.33915 -26.90855 -24.35846 -23.26846 -22.45513 -21.53210 -20.77904 -19.38593 -18.32798 -17.49615 -16.78841 -16.63837 -15.88343 -15.49928 -15.49395 -15.11800 -14.88574 -14.50787 -13.90302 -13.65869 -13.51439 -13.36527 -13.05293 -12.80389 -12.48705 -12.34961 -12.33821 -12.32913 -11.81520 -11.68330 -11.55418 -11.46527 -11.00455 -10.94337 -10.30772 -9.74939 -9.00537 -8.70924 -6.29069 1.46282 1.53561 1.54143 1.71978 2.04866 2.49490 2.98967 3.09759 3.28424 3.78513 3.83771 4.01829 4.07912 4.08728 4.20973 4.43655 4.50219 4.57114 4.65374 4.73730 4.76747 4.82621 4.86086 4.95126 4.98984 5.03285 5.11533 5.21133 5.23775 5.47808 5.52435 5.81931 6.09020 6.26776 6.49868 6.56874 6.74921 7.22224 7.46071 8.69085 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049697 B = 0.004416 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.277959 B = 6338.582643 C = 6588.784168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.185 3.815 3 H 0.028 0.972 4 C -0.584 4.584 5 H 0.031 0.969 6 C -0.020 4.020 7 N -0.940 5.940 8 Si 1.079 2.921 9 H -0.289 1.289 10 H -0.249 1.249 11 H -0.267 1.267 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.069 3.931 15 C -0.124 4.124 16 C 0.520 3.480 17 O -0.585 6.585 18 N -0.691 5.691 19 C 0.047 3.953 20 C -0.185 4.185 21 C -0.171 4.171 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.252 0.748 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 0.436 24.151 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.077 3.923 3 H 0.046 0.954 4 C -0.622 4.622 5 H 0.049 0.951 6 C -0.218 4.218 7 N -0.577 5.577 8 Si 0.901 3.099 9 H -0.215 1.215 10 H -0.173 1.173 11 H -0.192 1.192 12 N -0.260 5.260 13 C -0.112 4.112 14 C -0.059 4.059 15 C -0.164 4.164 16 C 0.308 3.692 17 O -0.464 6.464 18 N -0.342 5.342 19 C -0.059 4.059 20 C -0.223 4.223 21 C -0.209 4.209 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.255 0.745 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.442 2.202 22.975 23.126 hybrid contribution -0.070 -1.781 0.624 1.889 sum 1.373 0.421 23.599 23.643 Atomic orbital electron populations 1.22707 1.00069 1.00763 1.00210 1.19477 0.90064 0.94237 0.88551 0.95401 1.22127 1.38700 1.09060 0.92285 0.95056 1.26983 0.94545 1.08244 0.91992 1.70999 1.45022 1.09027 1.32635 0.83630 0.78637 0.71383 0.76202 1.21475 1.17349 1.19181 1.62149 1.59578 1.02751 1.01549 1.22263 0.97112 0.90077 1.01704 1.21749 0.97136 0.97688 0.89357 1.21568 1.03885 1.01109 0.89857 1.20944 0.79397 0.83304 0.85572 1.90681 1.36984 1.31659 1.87120 1.45278 1.47676 1.35725 1.05497 1.21637 1.01667 1.00707 0.81856 1.23506 0.95819 1.00909 1.02094 1.23470 1.02570 0.98317 0.96498 0.93932 0.93531 0.93033 0.93864 0.93678 0.89608 0.96455 0.92245 0.95555 0.86689 0.86554 0.74481 0.86906 0.87578 0.87440 0.86987 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.98 8.12 71.98 0.58 -7.40 16 2 C 0.19 8.91 1.93 44.17 0.09 9.00 16 3 H 0.03 1.38 6.67 -2.39 -0.02 1.36 16 4 C -0.58 -33.26 8.31 25.60 0.21 -33.05 16 5 H 0.03 1.95 6.78 -2.91 -0.02 1.93 16 6 C -0.02 -1.14 5.34 84.66 0.45 -0.69 16 7 N -0.94 -59.31 13.70 21.45 0.29 -59.02 16 8 Si 1.08 51.08 26.46 68.60 1.82 52.90 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 10 H -0.25 -10.65 5.53 99.48 0.55 -10.10 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.54 -22.00 4.74 -901.48 -4.28 -26.27 16 13 C 0.04 1.36 8.70 127.69 1.11 2.47 16 14 C 0.07 2.41 3.70 86.30 0.32 2.73 16 15 C -0.12 -3.07 5.63 29.85 0.17 -2.90 16 16 C 0.52 13.49 7.83 87.66 0.69 14.18 16 17 O -0.58 -20.58 15.55 -3.04 -0.05 -20.63 16 18 N -0.69 -12.38 5.57 -442.52 -2.46 -14.84 16 19 C 0.05 0.81 6.43 44.99 0.29 1.10 16 20 C -0.18 -2.19 10.46 30.62 0.32 -1.87 16 21 C -0.17 -1.80 10.46 30.62 0.32 -1.48 16 22 H 0.04 1.92 6.71 -2.39 -0.02 1.90 16 23 H 0.05 1.86 6.49 -2.39 -0.02 1.85 16 24 H 0.05 2.34 4.88 -2.38 -0.01 2.32 16 25 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 26 H 0.04 1.94 6.43 -2.39 -0.02 1.93 16 27 H 0.09 2.44 6.30 -2.38 -0.02 2.42 16 28 H 0.02 0.64 6.41 -2.39 -0.02 0.62 16 29 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 30 H 0.03 0.96 6.77 -2.39 -0.02 0.95 16 31 H 0.12 2.32 6.47 -2.39 -0.02 2.31 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.42 4.68 8.83 -92.71 -0.82 3.86 16 34 H 0.11 2.50 7.40 -2.39 -0.02 2.48 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -71.96 300.19 -0.08 -72.05 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.05 Total: 13.72 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.55 Total: -17.91 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -6.44 Total: -100.13 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 1.82 Total: 52.90 kcal Total: -71.96 -0.08 -72.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.961 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds