Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47142 * 2 1 4 4 C 1.50700 * 109.47662 * 120.00354 * 2 1 3 5 5 H 1.07998 * 120.00200 * 119.99693 * 4 2 1 6 6 C 1.37878 * 119.99545 * 300.00141 * 4 2 1 7 7 N 1.31506 * 120.00503 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46889 * 119.99712 * 8 6 4 11 11 H 1.48495 * 109.47064 * 240.00295 * 8 6 4 12 12 N 1.46898 * 109.46880 * 240.00505 * 2 1 3 13 13 C 1.46902 * 110.99967 * 306.04179 * 12 2 1 14 14 C 1.46897 * 111.00169 * 70.00117 * 12 2 1 15 15 H 1.09005 * 109.46837 * 296.39030 * 14 12 2 16 16 C 1.52997 * 109.47526 * 56.39427 * 14 12 2 17 17 C 1.50700 * 109.47129 * 176.39608 * 14 12 2 18 18 O 1.21280 * 120.00049 * 332.03811 * 17 14 12 19 19 N 1.34779 * 120.00203 * 152.04113 * 17 14 12 20 20 C 1.46502 * 119.99903 * 179.97438 * 19 17 14 21 21 C 1.52999 * 117.49786 * 223.74425 * 20 19 17 22 22 C 1.53000 * 117.49569 * 155.08595 * 20 19 17 23 23 H 1.09008 * 109.46877 * 299.99634 * 1 2 3 24 24 H 1.08999 * 109.47435 * 59.99559 * 1 2 3 25 25 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00497 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47174 * 190.42754 * 13 12 2 28 28 H 1.09002 * 109.46999 * 310.42312 * 13 12 2 29 29 H 1.08996 * 109.46664 * 70.42534 * 13 12 2 30 30 H 1.08998 * 109.47213 * 180.02562 * 16 14 12 31 31 H 1.09002 * 109.46769 * 299.99945 * 16 14 12 32 32 H 1.09000 * 109.46956 * 59.99771 * 16 14 12 33 33 H 0.97004 * 119.99954 * 359.97438 * 19 17 14 34 34 H 1.08998 * 115.55156 * 9.42230 * 20 19 17 35 35 H 1.08999 * 117.50087 * 0.02562 * 21 20 19 36 36 H 1.08996 * 117.49722 * 145.02718 * 21 20 19 37 37 H 1.09005 * 117.49715 * 214.98009 * 22 20 19 38 38 H 1.09000 * 117.50247 * 359.97370 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3216 -1.1205 4.0079 9 1 3.1457 -2.2878 3.6036 10 1 3.1468 -0.1874 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0974 -2.4090 15 1 0.6763 0.2008 -2.5453 16 6 2.3839 1.4835 -2.2626 17 6 2.3458 -0.6007 -3.6057 18 8 3.3144 -1.3180 -3.4709 19 7 1.7999 -0.4278 -4.8258 20 6 2.3767 -1.1060 -5.9892 21 6 2.5378 -0.2910 -7.2740 22 6 1.4554 -1.3695 -7.1819 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7096 1.1616 3.4845 27 1 1.9467 -2.5929 -2.0920 28 1 1.5461 -2.5582 -0.3580 29 1 0.3758 -1.9515 -1.5541 30 1 2.1856 2.0696 -3.1599 31 1 1.9549 1.9884 -1.3971 32 1 3.4604 1.3800 -2.1263 33 1 1.0249 0.1456 -4.9335 34 1 3.1393 -1.8527 -5.7678 35 1 2.2150 0.7498 -7.2535 36 1 3.4062 -0.5018 -7.8980 37 1 1.6122 -2.2893 -7.7455 38 1 0.4200 -1.0386 -7.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = 1.087127 kcal Electronic energy + Delta-G solvation = -17881.479054 eV Core-core repulsion = 15146.304937 eV Total energy + Delta-G solvation = -2735.174117 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81085 -37.60890 -36.40951 -33.06498 -32.53551 -30.53235 -28.61405 -25.24662 -24.37477 -24.23247 -22.57555 -21.65099 -20.43646 -18.72491 -17.09031 -16.51465 -15.96437 -15.23356 -14.69327 -14.59367 -14.25843 -13.95734 -13.19540 -12.93475 -12.84290 -12.50299 -11.83643 -11.79077 -11.61842 -11.45741 -11.39293 -11.01308 -10.84907 -10.72230 -10.69233 -10.63553 -10.38531 -10.04711 -9.94688 -9.17557 -8.85511 -8.68595 -8.33944 -7.13065 -5.99521 -4.01627 2.89546 3.17202 3.32781 3.40655 3.46999 3.80321 4.44448 4.64077 4.80182 4.83870 4.93912 5.04590 5.32916 5.41734 5.59779 5.64025 5.65835 5.85420 5.87517 5.99857 6.21830 6.34372 6.38892 6.58346 6.63147 6.69653 6.81260 6.91948 7.10795 7.39499 7.64154 7.69434 7.87709 8.13010 8.37298 8.52993 8.62498 9.04973 9.62975 11.07882 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050165 B = 0.005270 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.025331 B = 5312.052062 C = 5458.860537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.206 3.794 3 H 0.049 0.951 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.511 5.511 13 C 0.032 3.968 14 C 0.068 3.932 15 H 0.049 0.951 16 C -0.139 4.139 17 C 0.523 3.477 18 O -0.516 6.516 19 N -0.713 5.713 20 C 0.086 3.914 21 C -0.197 4.197 22 C -0.193 4.193 23 H 0.090 0.910 24 H 0.005 0.995 25 H 0.031 0.969 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -0.127 -15.943 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.100 3.900 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.236 5.236 13 C -0.116 4.116 14 C -0.044 4.044 15 H 0.067 0.933 16 C -0.197 4.197 17 C 0.310 3.690 18 O -0.389 6.389 19 N -0.365 5.365 20 C -0.021 4.021 21 C -0.236 4.236 22 C -0.232 4.232 23 H 0.108 0.892 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.490 -0.604 -15.599 15.618 hybrid contribution -1.162 -0.011 0.598 1.307 sum -1.652 -0.615 -15.001 15.104 Atomic orbital electron populations 1.22429 1.00898 0.99492 1.00442 1.19486 0.89666 0.95164 0.85661 0.93308 1.21152 1.30243 1.12479 0.89465 0.91778 1.24906 0.95271 0.95178 0.98955 1.69883 1.37328 1.23159 1.23262 0.86459 0.78508 0.79750 0.82834 1.19686 1.21073 1.21246 1.62210 1.58909 1.01948 1.00549 1.22292 0.95142 0.91711 1.02479 1.21508 0.97521 0.94916 0.90460 0.93334 1.21807 1.02458 0.93487 1.01941 1.20992 0.83581 0.80909 0.83517 1.90657 1.26024 1.37188 1.85026 1.45563 1.33835 1.50372 1.06690 1.21532 1.00218 0.99272 0.81031 1.23418 1.01247 0.97325 1.01567 1.23367 0.96563 1.00956 1.02272 0.89187 0.97580 0.95017 0.93112 0.93172 0.90314 0.97153 0.93124 0.90166 0.91298 0.76752 0.84655 0.88607 0.88215 0.88094 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.23 37.16 0.31 -3.79 16 2 C 0.21 5.12 2.07 -68.87 -0.14 4.97 16 3 H 0.05 1.29 5.71 -51.92 -0.30 0.99 16 4 C -0.49 -13.64 7.82 -34.44 -0.27 -13.91 16 5 H 0.06 1.82 7.18 -52.49 -0.38 1.44 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.51 -11.44 4.29 -229.69 -0.99 -12.43 16 13 C 0.03 0.68 8.08 60.07 0.49 1.17 16 14 C 0.07 1.25 2.17 -68.87 -0.15 1.10 16 15 H 0.05 0.84 6.77 -51.93 -0.35 0.49 16 16 C -0.14 -2.36 8.86 37.16 0.33 -2.03 16 17 C 0.52 9.10 6.08 -10.98 -0.07 9.03 16 18 O -0.52 -10.92 15.07 5.56 0.08 -10.83 16 19 N -0.71 -9.25 5.57 -53.81 -0.30 -9.55 16 20 C 0.09 0.99 6.43 -67.93 -0.44 0.56 16 21 C -0.20 -1.74 10.46 -26.69 -0.28 -2.02 16 22 C -0.19 -1.66 10.46 -26.69 -0.28 -1.94 16 23 H 0.09 2.35 6.07 -51.92 -0.32 2.04 16 24 H 0.01 0.11 6.76 -51.93 -0.35 -0.24 16 25 H 0.03 0.73 6.56 -51.93 -0.34 0.39 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 27 H 0.05 1.04 6.56 -51.93 -0.34 0.70 16 28 H 0.08 1.77 6.64 -51.93 -0.34 1.43 16 29 H 0.01 0.20 6.85 -51.93 -0.36 -0.15 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.46 6.14 -51.93 -0.32 1.14 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 4.12 8.83 -40.82 -0.36 3.76 16 34 H 0.14 1.79 7.40 -51.93 -0.38 1.40 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -30.71 301.70 -7.45 -38.17 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.81 Total: 3.55 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.60 Total: -5.37 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.66 Total: -46.57 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.71 -7.45 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds