Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47142 * 2 1 4 4 C 1.50700 * 109.47662 * 120.00354 * 2 1 3 5 5 H 1.07998 * 120.00200 * 119.99693 * 4 2 1 6 6 C 1.37878 * 119.99545 * 300.00141 * 4 2 1 7 7 N 1.31506 * 120.00503 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46889 * 119.99712 * 8 6 4 11 11 H 1.48495 * 109.47064 * 240.00295 * 8 6 4 12 12 N 1.46898 * 109.46880 * 240.00505 * 2 1 3 13 13 C 1.46902 * 110.99967 * 306.04179 * 12 2 1 14 14 C 1.46897 * 111.00169 * 70.00117 * 12 2 1 15 15 H 1.09005 * 109.46837 * 296.39030 * 14 12 2 16 16 C 1.52997 * 109.47526 * 56.39427 * 14 12 2 17 17 C 1.50700 * 109.47129 * 176.39608 * 14 12 2 18 18 O 1.21280 * 120.00049 * 332.03811 * 17 14 12 19 19 N 1.34779 * 120.00203 * 152.04113 * 17 14 12 20 20 C 1.46502 * 119.99903 * 179.97438 * 19 17 14 21 21 C 1.52999 * 117.49786 * 223.74425 * 20 19 17 22 22 C 1.53000 * 117.49569 * 155.08595 * 20 19 17 23 23 H 1.09008 * 109.46877 * 299.99634 * 1 2 3 24 24 H 1.08999 * 109.47435 * 59.99559 * 1 2 3 25 25 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00497 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47174 * 190.42754 * 13 12 2 28 28 H 1.09002 * 109.46999 * 310.42312 * 13 12 2 29 29 H 1.08996 * 109.46664 * 70.42534 * 13 12 2 30 30 H 1.08998 * 109.47213 * 180.02562 * 16 14 12 31 31 H 1.09002 * 109.46769 * 299.99945 * 16 14 12 32 32 H 1.09000 * 109.46956 * 59.99771 * 16 14 12 33 33 H 0.97004 * 119.99954 * 359.97438 * 19 17 14 34 34 H 1.08998 * 115.55156 * 9.42230 * 20 19 17 35 35 H 1.08999 * 117.50087 * 0.02562 * 21 20 19 36 36 H 1.08996 * 117.49722 * 145.02718 * 21 20 19 37 37 H 1.09005 * 117.49715 * 214.98009 * 22 20 19 38 38 H 1.09000 * 117.50247 * 359.97370 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3216 -1.1205 4.0079 9 1 3.1457 -2.2878 3.6036 10 1 3.1468 -0.1874 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0974 -2.4090 15 1 0.6763 0.2008 -2.5453 16 6 2.3839 1.4835 -2.2626 17 6 2.3458 -0.6007 -3.6057 18 8 3.3144 -1.3180 -3.4709 19 7 1.7999 -0.4278 -4.8258 20 6 2.3767 -1.1060 -5.9892 21 6 2.5378 -0.2910 -7.2740 22 6 1.4554 -1.3695 -7.1819 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7096 1.1616 3.4845 27 1 1.9467 -2.5929 -2.0920 28 1 1.5461 -2.5582 -0.3580 29 1 0.3758 -1.9515 -1.5541 30 1 2.1856 2.0696 -3.1599 31 1 1.9549 1.9884 -1.3971 32 1 3.4604 1.3800 -2.1263 33 1 1.0249 0.1456 -4.9335 34 1 3.1393 -1.8527 -5.7678 35 1 2.2150 0.7498 -7.2535 36 1 3.4062 -0.5018 -7.8980 37 1 1.6122 -2.2893 -7.7455 38 1 0.4200 -1.0386 -7.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = -20.634242 kcal Electronic energy + Delta-G solvation = -17882.420963 eV Core-core repulsion = 15146.304937 eV Total energy + Delta-G solvation = -2736.116026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15829 -38.93614 -37.72221 -34.90100 -33.88613 -32.05920 -30.46858 -27.28473 -26.08858 -25.63016 -23.24650 -22.85849 -21.77632 -20.37681 -18.58481 -18.07460 -17.36823 -16.87051 -16.38391 -15.98073 -15.50766 -15.32959 -14.78616 -14.59649 -14.39984 -13.67251 -13.48380 -13.20909 -13.06027 -12.87987 -12.80379 -12.58191 -12.45278 -12.38597 -12.28131 -12.11940 -12.05203 -11.79532 -11.44095 -10.87112 -10.66763 -10.40200 -9.70753 -8.84492 -8.09457 -6.18008 1.41278 1.43884 1.55265 1.58922 2.04781 2.45444 3.01533 3.19733 3.33896 3.76032 3.85361 4.08708 4.10521 4.16740 4.21636 4.47395 4.63859 4.77768 4.78523 4.80586 4.80906 4.90056 4.94404 5.04680 5.13029 5.19159 5.23613 5.25797 5.53151 5.57081 5.72157 5.81238 6.21215 6.47035 6.50686 6.75956 6.93440 7.30483 7.50225 8.96557 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050165 B = 0.005270 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.025331 B = 5312.052062 C = 5458.860537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.212 3.788 3 H 0.030 0.970 4 C -0.515 4.515 5 H 0.047 0.953 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.533 5.533 13 C 0.043 3.957 14 C 0.065 3.935 15 H 0.068 0.932 16 C -0.133 4.133 17 C 0.527 3.473 18 O -0.563 6.563 19 N -0.692 5.692 20 C 0.047 3.953 21 C -0.180 4.180 22 C -0.171 4.171 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 0.208 -17.736 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 H 0.048 0.952 4 C -0.554 4.554 5 H 0.065 0.935 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.258 5.258 13 C -0.105 4.105 14 C -0.047 4.047 15 H 0.086 0.914 16 C -0.191 4.191 17 C 0.313 3.687 18 O -0.440 6.440 19 N -0.344 5.344 20 C -0.058 4.058 21 C -0.219 4.219 22 C -0.209 4.209 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.251 0.749 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.458 -0.251 -17.445 17.507 hybrid contribution -0.874 -0.099 1.042 1.364 sum -2.331 -0.349 -16.403 16.571 Atomic orbital electron populations 1.22218 0.99944 0.99254 1.00446 1.19237 0.90216 0.93964 0.86019 0.95180 1.21377 1.30433 1.12333 0.91210 0.93483 1.25562 0.95442 0.95845 1.01377 1.69978 1.37817 1.23924 1.23913 0.85565 0.78107 0.78617 0.79674 1.19954 1.20588 1.20447 1.62034 1.59638 1.02622 1.01499 1.22139 0.95884 0.91177 1.01311 1.21611 0.98747 0.94983 0.89341 0.91443 1.21758 1.00863 0.93223 1.03233 1.20736 0.83068 0.80394 0.84487 1.90642 1.28144 1.39426 1.85811 1.45304 1.33573 1.49708 1.05780 1.21621 1.02004 1.00756 0.81452 1.23501 1.01771 0.97891 0.98697 1.23468 0.96906 1.01425 0.99067 0.91717 0.94891 0.95218 0.92922 0.92982 0.92442 0.95753 0.89059 0.91714 0.93274 0.74903 0.87044 0.87495 0.87237 0.86879 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.46 8.23 71.98 0.59 -6.87 16 2 C 0.21 10.66 2.07 44.17 0.09 10.75 16 3 H 0.03 1.63 5.71 -2.38 -0.01 1.62 16 4 C -0.51 -28.98 7.82 25.60 0.20 -28.78 16 5 H 0.05 2.75 7.18 -2.91 -0.02 2.73 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.53 -24.00 4.29 -880.60 -3.78 -27.78 16 13 C 0.04 1.84 8.08 127.69 1.03 2.87 16 14 C 0.07 2.32 2.17 44.17 0.10 2.41 16 15 H 0.07 2.15 6.77 -2.38 -0.02 2.13 16 16 C -0.13 -4.38 8.86 71.98 0.64 -3.74 16 17 C 0.53 17.84 6.08 87.66 0.53 18.37 16 18 O -0.56 -24.10 15.07 -3.03 -0.05 -24.15 16 19 N -0.69 -16.49 5.57 -442.53 -2.46 -18.95 16 20 C 0.05 1.01 6.43 44.99 0.29 1.30 16 21 C -0.18 -2.61 10.46 30.62 0.32 -2.29 16 22 C -0.17 -2.35 10.46 30.62 0.32 -2.03 16 23 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 24 H 0.03 1.31 6.76 -2.39 -0.02 1.30 16 25 H 0.03 1.35 6.56 -2.39 -0.02 1.34 16 26 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 27 H 0.05 2.17 6.56 -2.39 -0.02 2.16 16 28 H 0.06 2.65 6.64 -2.39 -0.02 2.63 16 29 H 0.02 0.94 6.85 -2.39 -0.02 0.93 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.33 6.14 -2.39 -0.01 2.32 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 7.19 8.83 -92.71 -0.82 6.37 16 34 H 0.11 2.94 7.40 -2.39 -0.02 2.92 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -67.19 301.70 0.78 -66.41 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.24 Total: 16.19 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.56 Total: -6.65 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -6.00 Total: -98.37 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.19 0.78 -66.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.780 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds