Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47510 * 2 1 4 4 C 1.50700 * 109.47506 * 239.99508 * 2 1 3 5 5 H 1.07996 * 120.00422 * 244.11311 * 4 2 1 6 6 C 1.37881 * 119.99778 * 64.38862 * 4 2 1 7 7 N 1.31513 * 120.00146 * 204.33344 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 24.33485 * 6 4 2 9 9 H 1.48500 * 109.47199 * 87.95562 * 8 6 4 10 10 H 1.48498 * 109.47327 * 207.95869 * 8 6 4 11 11 H 1.48507 * 109.47064 * 327.95545 * 8 6 4 12 12 N 1.46899 * 109.47032 * 119.99818 * 2 1 3 13 13 C 1.46901 * 111.00405 * 53.15383 * 12 2 1 14 14 C 1.46902 * 110.99936 * 289.19786 * 12 2 1 15 15 H 1.08998 * 109.46899 * 47.69037 * 14 12 2 16 16 C 1.52999 * 109.47255 * 167.68613 * 14 12 2 17 17 C 1.50700 * 109.47160 * 287.68916 * 14 12 2 18 18 O 1.21277 * 120.00182 * 0.02562 * 17 14 12 19 19 N 1.34778 * 119.99675 * 179.97438 * 17 14 12 20 20 C 1.46500 * 119.99626 * 179.97438 * 19 17 14 21 21 C 1.52998 * 117.49836 * 223.62135 * 20 19 17 22 22 C 1.52994 * 60.00277 * 252.51101 * 21 20 19 23 23 H 1.08997 * 109.46777 * 177.31443 * 1 2 3 24 24 H 1.08991 * 109.47431 * 297.31786 * 1 2 3 25 25 H 1.09001 * 109.46742 * 57.32003 * 1 2 3 26 26 H 0.97000 * 119.99838 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46825 * 52.63584 * 13 12 2 28 28 H 1.08998 * 109.47478 * 172.63746 * 13 12 2 29 29 H 1.08999 * 109.46626 * 292.63994 * 13 12 2 30 30 H 1.08994 * 109.47107 * 172.86802 * 16 14 12 31 31 H 1.09000 * 109.47251 * 292.87428 * 16 14 12 32 32 H 1.09002 * 109.47097 * 52.87291 * 16 14 12 33 33 H 0.96998 * 120.00646 * 359.97438 * 19 17 14 34 34 H 1.08998 * 115.55521 * 9.33193 * 20 19 17 35 35 H 1.09002 * 117.50334 * 0.02562 * 21 20 19 36 36 H 1.09003 * 117.50196 * 145.02447 * 21 20 19 37 37 H 1.09000 * 117.50248 * 252.51317 * 22 21 20 38 38 H 1.09004 * 117.52130 * 107.47954 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5974 -1.6257 -1.1326 6 6 1.7756 -0.1891 -2.4807 7 7 1.7652 -0.9781 -3.5328 8 14 1.4424 1.6381 -2.6802 9 1 2.7275 2.3578 -2.8693 10 1 0.5739 1.8565 -3.8648 11 1 0.7610 2.1526 -1.4652 12 7 2.0196 -0.6925 1.1995 13 6 1.4198 -2.0282 1.3181 14 6 1.7699 0.1059 2.4070 15 1 0.7394 0.4609 2.4012 16 6 2.0044 -0.7585 3.6475 17 6 2.7074 1.2855 2.4322 18 8 3.5048 1.4457 1.5325 19 7 2.6591 2.1630 3.4540 20 6 3.5709 3.3094 3.4786 21 6 4.2464 3.6463 4.8095 22 6 3.1321 4.5442 4.2684 23 1 -0.3633 -1.0265 -0.0482 24 1 -0.3634 0.4716 0.9130 25 1 -0.3633 0.5549 -0.8650 26 1 1.5849 -0.6112 -4.4124 27 1 1.5672 -2.5766 0.3877 28 1 1.8944 -2.5682 2.1373 29 1 0.3525 -1.9307 1.5172 30 1 1.9435 -0.1366 4.5405 31 1 1.2448 -1.5388 3.6955 32 1 2.9921 -1.2160 3.5901 33 1 2.0206 2.0356 4.1730 34 1 4.1452 3.4732 2.5668 35 1 4.0128 3.0147 5.6666 36 1 5.2654 4.0316 4.7734 37 1 3.4180 5.5202 3.8762 38 1 2.1648 4.5038 4.7692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -17.571206 kcal Electronic energy + Delta-G solvation = -18128.859943 eV Core-core repulsion = 15392.876740 eV Total energy + Delta-G solvation = -2735.983203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14112 -38.96712 -37.66612 -35.10627 -33.99413 -32.52470 -30.01353 -27.48458 -27.22427 -24.55609 -23.24695 -22.74345 -21.76998 -20.53080 -18.75249 -18.14845 -17.52332 -17.10351 -16.30587 -15.91329 -15.45639 -15.33444 -15.01605 -14.63768 -14.28459 -13.79142 -13.61609 -13.54108 -13.33218 -13.10970 -12.73663 -12.54111 -12.49658 -12.36110 -12.29790 -12.24591 -11.72318 -11.62876 -11.44339 -11.34458 -10.66644 -10.35518 -9.67108 -8.85922 -8.33349 -6.19162 1.25307 1.33393 1.41092 1.68953 2.08246 2.33385 3.00839 3.02012 3.28253 3.78467 3.88419 4.07985 4.10143 4.11672 4.20725 4.46378 4.59263 4.65712 4.69275 4.76801 4.77324 4.84823 4.91319 4.96753 5.04237 5.08419 5.22960 5.25692 5.31513 5.51406 5.60208 5.69179 6.05095 6.45572 6.58221 6.77517 6.80804 7.38326 7.40807 8.83852 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.007848 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.713422 B = 3567.105291 C = 4321.293891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.190 3.810 3 H 0.023 0.977 4 C -0.506 4.506 5 H 0.038 0.962 6 C 0.028 3.972 7 N -0.929 5.929 8 Si 0.917 3.083 9 H -0.287 1.287 10 H -0.279 1.279 11 H -0.248 1.248 12 N -0.532 5.532 13 C 0.039 3.961 14 C 0.056 3.944 15 H 0.078 0.922 16 C -0.134 4.134 17 C 0.512 3.488 18 O -0.564 6.564 19 N -0.691 5.691 20 C 0.043 3.957 21 C -0.176 4.176 22 C -0.171 4.171 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.415 0.585 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 7.962 21.374 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.056 0.944 6 C -0.170 4.170 7 N -0.568 5.568 8 Si 0.742 3.258 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.172 1.172 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.056 4.056 15 H 0.095 0.905 16 C -0.192 4.192 17 C 0.299 3.701 18 O -0.440 6.440 19 N -0.344 5.344 20 C -0.063 4.063 21 C -0.214 4.214 22 C -0.209 4.209 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.722 7.975 20.480 22.045 hybrid contribution -0.863 0.717 -0.718 1.332 sum -2.585 8.692 19.762 21.743 Atomic orbital electron populations 1.22590 0.99432 1.01132 0.99738 1.19446 0.89932 0.94120 0.88332 0.95895 1.20996 1.34199 1.09094 0.90071 0.94413 1.25488 0.94983 1.00912 0.95649 1.70162 1.50289 1.36283 1.00103 0.86262 0.78101 0.83095 0.78305 1.21334 1.20428 1.17221 1.61789 1.59670 1.03205 1.00939 1.22299 0.96930 0.89869 1.01790 1.21734 0.96821 0.93184 0.93843 0.90500 1.21889 1.03249 1.00123 0.93921 1.21115 0.84074 0.83806 0.81125 1.90724 1.40015 1.75223 1.38048 1.45200 1.38948 1.25061 1.25156 1.21564 0.98229 0.89058 0.97430 1.23473 0.98592 1.02889 0.96477 1.23454 1.00307 0.94690 1.02418 0.92691 0.92714 0.94533 0.92588 0.93673 0.89884 0.94627 0.88960 0.89631 0.92477 0.74698 0.87989 0.86989 0.87603 0.87340 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.39 7.94 71.98 0.57 -6.82 16 2 C 0.19 9.55 1.53 44.17 0.07 9.62 16 3 H 0.02 1.27 4.82 -2.39 -0.01 1.26 16 4 C -0.51 -30.66 8.31 25.60 0.21 -30.45 16 5 H 0.04 2.54 7.30 -2.91 -0.02 2.52 16 6 C 0.03 1.74 5.25 84.66 0.44 2.18 16 7 N -0.93 -59.64 13.96 21.45 0.30 -59.34 16 8 Si 0.92 47.67 26.11 68.60 1.79 49.46 16 9 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.25 -12.13 5.92 99.48 0.59 -11.54 16 12 N -0.53 -22.71 4.23 -880.59 -3.72 -26.43 16 13 C 0.04 1.43 7.61 127.69 0.97 2.40 16 14 C 0.06 1.79 2.46 44.17 0.11 1.90 16 15 H 0.08 2.21 6.25 -2.39 -0.01 2.20 16 16 C -0.13 -2.91 8.04 71.98 0.58 -2.33 16 17 C 0.51 18.06 6.79 87.66 0.60 18.66 16 18 O -0.56 -26.98 14.51 -3.02 -0.04 -27.02 16 19 N -0.69 -16.78 5.41 -442.53 -2.39 -19.17 16 20 C 0.04 1.02 6.43 44.99 0.29 1.31 16 21 C -0.18 -2.74 10.46 30.59 0.32 -2.42 16 22 C -0.17 -2.58 10.45 30.59 0.32 -2.26 16 23 H 0.05 2.35 6.65 -2.39 -0.02 2.33 16 24 H 0.05 1.95 6.43 -2.39 -0.02 1.94 16 25 H 0.04 1.65 5.68 -2.39 -0.01 1.64 16 26 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 27 H 0.04 2.00 6.67 -2.39 -0.02 1.98 16 28 H 0.08 2.49 6.58 -2.39 -0.02 2.47 16 29 H 0.04 1.15 6.73 -2.39 -0.02 1.14 16 30 H 0.09 1.31 7.37 -2.39 -0.02 1.29 16 31 H 0.08 1.58 6.90 -2.39 -0.02 1.56 16 32 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.42 6.59 8.17 -92.71 -0.76 5.83 16 34 H 0.10 3.12 7.40 -2.39 -0.02 3.10 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -78.96 295.56 0.60 -78.37 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.19 Total: 12.37 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.48 Total: -8.23 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -5.82 Total: -104.94 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.04 Total: -27.02 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.79 Total: 49.46 kcal Total: -78.96 0.60 -78.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.796 kcal (2) G-P(sol) polarization free energy of solvation -78.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds