Wall clock time and date at job start Mon Mar 30 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 7 7 O 1.21270 * 120.00172 * 180.02562 * 6 3 2 8 8 C 1.50706 * 119.99638 * 359.97438 * 6 3 2 9 9 H 1.08996 * 110.32606 * 42.23458 * 8 6 3 10 10 C 1.54917 * 110.36485 * 280.00034 * 8 6 3 11 11 C 1.55152 * 101.57827 * 204.15604 * 10 8 6 12 12 C 1.54317 * 102.94696 * 35.50137 * 11 10 8 13 13 N 1.47024 * 107.27161 * 337.80539 * 12 11 10 14 14 C 1.36941 * 125.65174 * 178.97393 * 13 12 11 15 15 H 1.08001 * 119.99805 * 179.97438 * 14 13 12 16 16 C 1.38807 * 119.99741 * 359.95618 * 14 13 12 17 17 N 1.31625 * 120.00400 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46919 * 90.01150 * 18 16 14 20 20 H 1.48506 * 109.47448 * 210.00466 * 18 16 14 21 21 H 1.48494 * 109.47539 * 330.00569 * 18 16 14 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 28 28 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 29 29 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 30 30 H 1.08994 * 109.46887 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 32 32 H 1.08998 * 111.00013 * 322.22707 * 10 8 6 33 33 H 1.08997 * 111.00328 * 86.08057 * 10 8 6 34 34 H 1.09001 * 110.72247 * 153.86889 * 11 10 8 35 35 H 1.09008 * 110.71834 * 277.14085 * 11 10 8 36 36 H 1.08997 * 109.88439 * 97.22380 * 12 11 10 37 37 H 1.09008 * 109.88574 * 218.39191 * 12 11 10 38 38 H 0.96999 * 120.00005 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 6 2.2430 2.0166 -1.1671 7 8 2.6477 3.1598 -1.1671 8 6 1.9923 1.3060 -2.4723 9 1 1.0632 0.7383 -2.4219 10 6 3.1785 0.3696 -2.8128 11 6 3.0553 0.2592 -4.3554 12 6 2.5727 1.6665 -4.7653 13 7 1.9451 2.2743 -3.5829 14 6 1.4053 3.5315 -3.5232 15 1 0.9651 3.8870 -2.6033 16 6 1.4243 4.3488 -4.6449 17 7 1.9606 3.9155 -5.7661 18 14 0.6873 6.0634 -4.5638 19 1 1.7326 7.0322 -4.1467 20 1 0.1669 6.4425 -5.9020 21 1 -0.4234 6.0787 -3.5783 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0955 3.1411 1.1385 28 1 1.5817 1.6877 2.0284 29 1 4.3883 2.2155 0.9509 30 1 3.8892 2.3454 2.6542 31 1 3.8744 0.7621 1.8408 32 1 4.1281 0.8228 -2.5281 33 1 3.0552 -0.6048 -2.3402 34 1 4.0232 0.0373 -4.8048 35 1 2.3190 -0.4962 -4.6304 36 1 3.4214 2.2705 -5.0862 37 1 1.8444 1.5883 -5.5726 38 1 1.9735 4.4866 -6.5501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065297415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:40 Heat of formation + Delta-G solvation = -7.262728 kcal Electronic energy + Delta-G solvation = -18561.838000 eV Core-core repulsion = 15826.301806 eV Total energy + Delta-G solvation = -2735.536194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62370 -36.83587 -35.52100 -32.51081 -31.94643 -29.41538 -29.24720 -27.83955 -24.52468 -23.41018 -23.14403 -20.61949 -20.03312 -18.44252 -16.95693 -16.65577 -15.62629 -14.81010 -14.62567 -14.05329 -13.87286 -13.58666 -13.49123 -12.66020 -12.62266 -12.38873 -12.30866 -11.94675 -11.77341 -11.63598 -11.47489 -11.00184 -10.92391 -10.83254 -10.78290 -10.66222 -10.01738 -9.94101 -9.82544 -9.55763 -8.75785 -8.46155 -8.23390 -6.76821 -5.56657 -2.88550 3.38981 3.43750 3.53049 3.56896 3.58636 4.63056 4.96869 5.06200 5.26654 5.33899 5.41015 5.45329 5.49044 5.54019 5.57961 5.67102 5.76657 5.78228 5.88101 5.91194 5.95236 6.15687 6.20981 6.24616 6.33310 6.36910 6.50203 6.64653 6.77877 7.01898 7.65229 7.67722 7.91043 7.97723 8.35202 8.98796 9.35679 9.93353 10.54289 11.55865 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.008874 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.999029 B = 3154.453776 C = 3719.071025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.627 5.627 4 C 0.112 3.888 5 C -0.164 4.164 6 C 0.504 3.496 7 O -0.506 6.506 8 C 0.145 3.855 9 H 0.051 0.949 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.176 3.824 13 N -0.580 5.580 14 C -0.198 4.198 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.929 5.929 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.283 1.283 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -11.189 11.526 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.365 5.365 4 C -0.011 4.011 5 C -0.223 4.223 6 C 0.291 3.709 7 O -0.378 6.378 8 C 0.034 3.966 9 H 0.068 0.932 10 C -0.160 4.160 11 C -0.184 4.184 12 C 0.052 3.948 13 N -0.305 5.305 14 C -0.327 4.327 15 H 0.096 0.904 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.744 3.256 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.209 1.209 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.386 -10.328 11.329 15.335 hybrid contribution -0.343 0.899 0.165 0.976 sum 0.043 -9.430 11.494 14.867 Atomic orbital electron populations 1.22241 0.96333 1.01808 1.02776 1.21522 0.94222 0.83188 1.02752 1.48327 1.68118 1.14134 1.05896 1.21258 0.95749 0.98809 0.85320 1.22112 0.97759 1.01207 1.01192 1.21899 0.76629 0.87178 0.85230 1.90688 1.43022 1.17455 1.86620 1.21321 0.96884 0.91556 0.86871 0.93173 1.22702 0.98264 0.97696 0.97369 1.22878 1.00495 1.00499 0.94508 1.21230 0.97094 0.87435 0.89029 1.44440 1.68167 1.12833 1.05063 1.19055 1.28801 0.88384 0.96434 0.90361 1.24734 1.01702 0.98448 0.95974 1.69964 1.50740 1.35882 1.01245 0.86090 0.78559 0.84647 0.76333 1.21753 1.21902 1.20902 0.91902 0.92746 0.91767 0.90043 0.91173 0.90295 0.91530 0.92216 0.92263 0.93009 0.91493 0.91745 0.91929 0.92255 0.93424 0.93328 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.11 37.16 0.38 -1.58 16 2 C 0.11 1.27 5.75 -4.04 -0.02 1.25 16 3 N -0.63 -9.94 2.47 -173.68 -0.43 -10.37 16 4 C 0.11 1.56 6.13 -4.04 -0.02 1.54 16 5 C -0.16 -2.04 10.24 37.16 0.38 -1.66 16 6 C 0.50 10.59 6.60 -10.98 -0.07 10.52 16 7 O -0.51 -13.05 14.24 5.57 0.08 -12.97 16 8 C 0.15 3.05 2.66 -67.56 -0.18 2.87 16 9 H 0.05 1.00 6.31 -51.93 -0.33 0.67 16 10 C -0.12 -2.14 6.09 -24.58 -0.15 -2.29 16 11 C -0.15 -2.69 6.95 -24.90 -0.17 -2.87 16 12 C 0.18 4.39 5.37 -3.07 -0.02 4.38 16 13 N -0.58 -15.42 3.20 -163.90 -0.52 -15.94 16 14 C -0.20 -5.90 8.74 -15.06 -0.13 -6.03 16 15 H 0.08 2.38 6.85 -52.49 -0.36 2.02 16 16 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 17 N -0.93 -28.47 10.31 55.49 0.57 -27.90 16 18 Si 0.91 23.92 29.55 -169.99 -5.02 18.89 16 19 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 21 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.88 7.16 -51.93 -0.37 0.51 16 25 H 0.08 0.96 4.94 -51.93 -0.26 0.70 16 26 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 28 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 33 H 0.06 0.88 6.65 -51.93 -0.35 0.54 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 37 H 0.05 1.31 7.51 -51.92 -0.39 0.92 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -34.37 298.95 -7.10 -41.47 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.17 Total: -3.29 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.11 Total: 5.61 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.38 Total: -54.22 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.37 -7.10 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065297415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.210 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds