Wall clock time and date at job start Mon Mar 30 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 7 7 O 1.21270 * 120.00172 * 180.02562 * 6 3 2 8 8 C 1.50706 * 119.99638 * 359.97438 * 6 3 2 9 9 H 1.08996 * 110.32606 * 42.23458 * 8 6 3 10 10 C 1.54917 * 110.36485 * 280.00034 * 8 6 3 11 11 C 1.55152 * 101.57827 * 204.15604 * 10 8 6 12 12 C 1.54317 * 102.94696 * 35.50137 * 11 10 8 13 13 N 1.47024 * 107.27161 * 337.80539 * 12 11 10 14 14 C 1.36941 * 125.65174 * 178.97393 * 13 12 11 15 15 H 1.08001 * 119.99805 * 179.97438 * 14 13 12 16 16 C 1.38807 * 119.99741 * 359.95618 * 14 13 12 17 17 N 1.31625 * 120.00400 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46919 * 90.01150 * 18 16 14 20 20 H 1.48506 * 109.47448 * 210.00466 * 18 16 14 21 21 H 1.48494 * 109.47539 * 330.00569 * 18 16 14 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 28 28 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 29 29 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 30 30 H 1.08994 * 109.46887 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 32 32 H 1.08998 * 111.00013 * 322.22707 * 10 8 6 33 33 H 1.08997 * 111.00328 * 86.08057 * 10 8 6 34 34 H 1.09001 * 110.72247 * 153.86889 * 11 10 8 35 35 H 1.09008 * 110.71834 * 277.14085 * 11 10 8 36 36 H 1.08997 * 109.88439 * 97.22380 * 12 11 10 37 37 H 1.09008 * 109.88574 * 218.39191 * 12 11 10 38 38 H 0.96999 * 120.00005 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 6 2.2430 2.0166 -1.1671 7 8 2.6477 3.1598 -1.1671 8 6 1.9923 1.3060 -2.4723 9 1 1.0632 0.7383 -2.4219 10 6 3.1785 0.3696 -2.8128 11 6 3.0553 0.2592 -4.3554 12 6 2.5727 1.6665 -4.7653 13 7 1.9451 2.2743 -3.5829 14 6 1.4053 3.5315 -3.5232 15 1 0.9651 3.8870 -2.6033 16 6 1.4243 4.3488 -4.6449 17 7 1.9606 3.9155 -5.7661 18 14 0.6873 6.0634 -4.5638 19 1 1.7326 7.0322 -4.1467 20 1 0.1669 6.4425 -5.9020 21 1 -0.4234 6.0787 -3.5783 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0955 3.1411 1.1385 28 1 1.5817 1.6877 2.0284 29 1 4.3883 2.2155 0.9509 30 1 3.8892 2.3454 2.6542 31 1 3.8744 0.7621 1.8408 32 1 4.1281 0.8228 -2.5281 33 1 3.0552 -0.6048 -2.3402 34 1 4.0232 0.0373 -4.8048 35 1 2.3190 -0.4962 -4.6304 36 1 3.4214 2.2705 -5.0862 37 1 1.8444 1.5883 -5.5726 38 1 1.9735 4.4866 -6.5501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065297415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:40 Heat of formation + Delta-G solvation = -30.694334 kcal Electronic energy + Delta-G solvation = -18562.854071 eV Core-core repulsion = 15826.301806 eV Total energy + Delta-G solvation = -2736.552264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16355 -38.49965 -37.00539 -34.54272 -33.06329 -31.27054 -30.65372 -29.38017 -26.57874 -24.62535 -24.36457 -22.12373 -21.83244 -20.01189 -18.71363 -18.21702 -17.10310 -16.70486 -16.09222 -15.84486 -15.52372 -14.77080 -14.66251 -14.33388 -14.11767 -13.81906 -13.68332 -13.46542 -13.28336 -12.90230 -12.89628 -12.77166 -12.60644 -12.45800 -12.05042 -12.01946 -11.92470 -11.70872 -11.54855 -11.42253 -10.68084 -10.44062 -9.55850 -8.89562 -7.82308 -5.14788 1.37179 1.41961 1.49076 1.81174 2.15270 2.49776 3.36107 3.63944 3.72831 3.94093 4.10450 4.13806 4.23850 4.28886 4.34874 4.51777 4.54207 4.56603 4.65639 4.78238 4.82719 4.97393 4.99715 5.02996 5.08512 5.16924 5.26602 5.32163 5.42960 5.48190 5.68937 5.78666 5.82907 6.20140 6.53614 7.14065 7.43248 7.78846 8.38386 9.28181 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.008874 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.999029 B = 3154.453776 C = 3719.071025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.616 5.616 4 C 0.106 3.894 5 C -0.155 4.155 6 C 0.499 3.501 7 O -0.571 6.571 8 C 0.135 3.865 9 H 0.071 0.929 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.179 3.821 13 N -0.606 5.606 14 C -0.199 4.199 15 H 0.063 0.937 16 C -0.074 4.074 17 N -0.954 5.954 18 Si 0.969 3.031 19 H -0.296 1.296 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.002 0.998 37 H 0.017 0.983 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -14.132 13.782 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.351 5.351 4 C -0.016 4.016 5 C -0.214 4.214 6 C 0.287 3.713 7 O -0.448 6.448 8 C 0.025 3.975 9 H 0.088 0.912 10 C -0.146 4.146 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.329 4.329 15 H 0.080 0.920 16 C -0.266 4.266 17 N -0.605 5.605 18 Si 0.798 3.202 19 H -0.224 1.224 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.112 0.888 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.021 0.979 37 H 0.035 0.965 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.002 -13.351 13.652 19.096 hybrid contribution -0.263 1.723 -0.401 1.788 sum -0.261 -11.629 13.251 17.632 Atomic orbital electron populations 1.22208 0.95770 1.03414 1.01370 1.21916 0.94635 0.80740 1.05091 1.48303 1.66208 1.15604 1.04975 1.21460 0.97917 0.97067 0.85151 1.22035 0.95505 1.02887 1.00931 1.21789 0.76260 0.86470 0.86771 1.90659 1.46375 1.20103 1.87657 1.21633 0.99134 0.91108 0.85636 0.91152 1.22706 0.95854 0.99219 0.96776 1.22769 1.02160 0.96544 0.95210 1.21036 0.94535 0.90700 0.88290 1.44666 1.68139 1.12766 1.07539 1.19124 1.28142 0.90084 0.95518 0.91957 1.25492 1.03148 1.01932 0.96014 1.70167 1.52157 1.36661 1.01473 0.85204 0.77826 0.80513 0.76616 1.22351 1.21117 1.19973 0.88780 0.92421 0.94937 0.89346 0.87175 0.93715 0.87562 0.95717 0.90158 0.90506 0.92976 0.86214 0.89768 0.89323 0.97936 0.96514 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.11 71.98 0.73 -2.45 16 2 C 0.10 1.87 5.75 86.38 0.50 2.37 16 3 N -0.62 -18.20 2.47 -821.79 -2.03 -20.23 16 4 C 0.11 2.76 6.13 86.38 0.53 3.29 16 5 C -0.16 -3.49 10.24 71.98 0.74 -2.75 16 6 C 0.50 20.97 6.60 87.66 0.58 21.55 16 7 O -0.57 -30.65 14.24 -3.00 -0.04 -30.69 16 8 C 0.13 5.54 2.66 44.73 0.12 5.66 16 9 H 0.07 2.65 6.31 -2.39 -0.02 2.64 16 10 C -0.11 -3.47 6.09 31.99 0.19 -3.28 16 11 C -0.13 -4.49 6.95 31.78 0.22 -4.27 16 12 C 0.18 9.18 5.37 86.73 0.47 9.65 16 13 N -0.61 -33.11 3.20 -672.45 -2.15 -35.26 16 14 C -0.20 -12.32 8.74 84.03 0.73 -11.59 16 15 H 0.06 3.97 6.85 -2.91 -0.02 3.95 16 16 C -0.07 -4.64 5.49 84.86 0.47 -4.18 16 17 N -0.95 -61.17 10.31 21.65 0.22 -60.95 16 18 Si 0.97 50.99 29.55 68.60 2.03 53.02 16 19 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 20 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.03 0.82 7.16 -2.39 -0.02 0.80 16 25 H 0.09 1.60 4.94 -2.39 -0.01 1.59 16 26 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 27 H 0.04 1.48 7.42 -2.38 -0.02 1.46 16 28 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 33 H 0.12 2.59 6.65 -2.39 -0.02 2.58 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.00 0.14 7.38 -2.39 -0.02 0.12 16 37 H 0.02 0.94 7.51 -2.38 -0.02 0.92 16 38 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.95 298.95 4.32 -77.63 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.02 Total: 2.48 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.27 Total: 14.00 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -3.96 Total: -116.44 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.69 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.03 Total: 53.02 kcal Total: -81.95 4.32 -77.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065297415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.937 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds