Wall clock time and date at job start Mon Mar 30 2020 03:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50695 * 109.47438 * 120.00328 * 2 1 3 5 5 H 1.08001 * 119.99867 * 120.00091 * 4 2 1 6 6 C 1.37882 * 119.99979 * 300.00011 * 4 2 1 7 7 N 1.31506 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47415 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47004 * 120.00002 * 8 6 4 11 11 H 1.48504 * 109.46690 * 240.00156 * 8 6 4 12 12 N 1.46504 * 109.47153 * 240.00836 * 2 1 3 13 13 C 1.34770 * 120.00094 * 84.99696 * 12 2 1 14 14 O 1.21281 * 120.00244 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99761 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 59.99841 * 15 13 12 17 17 C 1.52999 * 109.47466 * 300.00109 * 15 13 12 18 18 C 1.52997 * 109.47317 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47060 * 59.99960 * 18 17 15 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 17 21 21 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 22 22 N 1.46899 * 109.47394 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 24 24 H 1.08995 * 109.47147 * 59.99692 * 1 2 3 25 25 H 1.08992 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46734 * 299.99758 * 1 2 3 27 27 H 0.96994 * 120.00328 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99455 * 264.99876 * 12 2 1 29 29 H 1.08996 * 109.46929 * 59.99194 * 17 15 13 30 30 H 1.09002 * 109.46716 * 299.99999 * 17 15 13 31 31 H 1.09002 * 109.47153 * 299.99641 * 18 17 15 32 32 H 1.09001 * 109.46832 * 179.97438 * 18 17 15 33 33 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 34 34 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 35 35 H 1.00899 * 110.99492 * 60.00133 * 22 20 19 36 36 H 1.00895 * 110.99738 * 183.95562 * 22 20 19 37 37 H 1.09002 * 109.47153 * 60.00231 * 23 20 19 38 38 H 1.09001 * 109.47289 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8300 2.6035 8 14 2.3216 -1.1206 4.0078 9 1 3.1467 -2.2872 3.6036 10 1 3.1469 -0.1876 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0184 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4116 15 6 2.6489 -0.7284 -3.5878 16 1 1.9760 -1.5503 -3.8327 17 6 4.0513 -1.2795 -3.3225 18 6 4.5610 -2.0002 -4.5721 19 6 4.6126 -1.0165 -5.7428 20 6 3.2101 -0.4655 -6.0083 21 1 2.5373 -1.2873 -6.2535 22 7 3.2596 0.4786 -7.1326 23 6 2.7005 0.2552 -4.7586 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7091 1.1612 3.4844 28 1 2.2491 -1.6317 -1.1528 29 1 4.0146 -1.9799 -2.4881 30 1 4.7242 -0.4577 -3.0776 31 1 3.8882 -2.8220 -4.8174 32 1 5.5603 -2.3924 -4.3832 33 1 5.2853 -0.1948 -5.4975 34 1 4.9753 -1.5301 -6.6332 35 1 3.5932 0.0259 -7.9704 36 1 2.3583 0.9051 -7.2865 37 1 3.3733 1.0770 -4.5133 38 1 1.7011 0.6474 -4.9475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:05 Heat of formation + Delta-G solvation = -69.219146 kcal Electronic energy + Delta-G solvation = -17697.954343 eV Core-core repulsion = 14959.731518 eV Total energy + Delta-G solvation = -2738.222826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67515 -37.65737 -34.74662 -33.67231 -32.27592 -30.93335 -28.86937 -27.82812 -25.24531 -23.62706 -21.98216 -20.86847 -19.70439 -19.19910 -17.15297 -15.78555 -15.63650 -15.23604 -15.01138 -14.99273 -14.48435 -14.04396 -13.69237 -13.19548 -12.59995 -12.39241 -12.28594 -11.94121 -11.70095 -11.52383 -11.11158 -11.06738 -10.93006 -10.70888 -10.65023 -10.49358 -10.27846 -10.23019 -10.18138 -9.01811 -8.85290 -8.78365 -8.52929 -7.85193 -6.10719 -4.19828 3.24322 3.32005 3.34656 3.46248 4.06378 4.32639 4.41580 4.74696 4.84263 5.08659 5.18702 5.21640 5.26212 5.40795 5.45105 5.50283 5.61053 5.77039 5.92926 6.05650 6.11783 6.21221 6.23497 6.38066 6.53156 6.84906 6.99152 7.06339 7.18132 7.32558 7.50999 7.60004 7.72271 7.94542 8.17488 8.72315 8.81449 9.19695 9.48208 10.95362 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042165 B = 0.005243 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.897927 B = 5339.527827 C = 5807.207754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.504 3.496 14 O -0.555 6.555 15 C -0.106 4.106 16 H 0.087 0.913 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.112 4.112 20 C 0.091 3.909 21 H 0.032 0.968 22 N -0.848 5.848 23 C -0.090 4.090 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.387 0.613 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.337 0.663 36 H 0.342 0.658 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -6.697 -14.888 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.289 3.711 14 O -0.435 6.435 15 C -0.128 4.128 16 H 0.106 0.894 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.020 4.020 21 H 0.050 0.950 22 N -0.378 5.378 23 C -0.128 4.128 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.918 -5.321 -14.299 16.030 hybrid contribution -0.395 -1.573 0.473 1.690 sum 4.522 -6.894 -13.825 16.097 Atomic orbital electron populations 1.22070 0.98587 0.99006 1.00838 1.18730 0.90959 0.94012 0.80191 0.93455 1.21262 1.32282 1.13141 0.90357 0.92071 1.24894 0.94840 0.94953 0.99060 1.69911 1.35994 1.22496 1.23724 0.86404 0.78594 0.79531 0.82624 1.19748 1.20880 1.20895 1.46525 1.65061 1.13468 1.10600 1.20386 0.78475 0.87460 0.84770 1.90647 1.51401 1.16205 1.85198 1.21312 0.98023 0.98968 0.94523 0.89449 1.21531 0.95093 1.00438 0.97839 1.21513 1.01251 0.97849 0.94741 1.21564 0.96644 0.98994 0.97833 1.21370 0.96325 0.92812 0.91518 0.94990 1.58672 1.33916 1.36746 1.08419 1.21291 1.02140 0.97685 0.91668 0.96724 0.95555 0.89204 0.92659 0.78031 0.91122 0.91195 0.92012 0.91521 0.91002 0.92502 0.85073 0.84547 0.90382 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -14.94 4.96 -54.93 -0.27 -15.21 16 13 C 0.50 10.20 7.12 -10.99 -0.08 10.12 16 14 O -0.56 -13.60 15.64 5.56 0.09 -13.52 16 15 C -0.11 -1.55 2.53 -91.77 -0.23 -1.79 16 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.11 -1.41 5.10 -26.73 -0.14 -1.55 16 18 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 19 C -0.11 -1.15 5.50 -26.73 -0.15 -1.30 16 20 C 0.09 1.00 3.24 -67.71 -0.22 0.78 16 21 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 22 N -0.85 -8.48 9.25 -4.67 -0.04 -8.53 16 23 C -0.09 -1.27 4.03 -26.73 -0.11 -1.38 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 7.07 7.96 -40.82 -0.32 6.74 16 29 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.34 2.66 9.04 -39.29 -0.36 2.31 16 36 H 0.34 3.15 8.99 -39.29 -0.35 2.80 16 37 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -30.81 304.05 -7.67 -38.48 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.32 Total: 9.01 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.31 Total: -6.00 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.31 Total: -48.27 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.81 -7.67 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.740 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds