Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50695 * 109.47438 * 120.00328 * 2 1 3 5 5 H 1.08001 * 119.99867 * 120.00091 * 4 2 1 6 6 C 1.37882 * 119.99979 * 300.00011 * 4 2 1 7 7 N 1.31506 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47415 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47004 * 120.00002 * 8 6 4 11 11 H 1.48504 * 109.46690 * 240.00156 * 8 6 4 12 12 N 1.46504 * 109.47153 * 240.00836 * 2 1 3 13 13 C 1.34770 * 120.00094 * 84.99696 * 12 2 1 14 14 O 1.21281 * 120.00244 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99761 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 59.99841 * 15 13 12 17 17 C 1.52999 * 109.47466 * 300.00109 * 15 13 12 18 18 C 1.52997 * 109.47317 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47060 * 59.99960 * 18 17 15 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 17 21 21 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 22 22 N 1.46899 * 109.47394 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 24 24 H 1.08995 * 109.47147 * 59.99692 * 1 2 3 25 25 H 1.08992 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46734 * 299.99758 * 1 2 3 27 27 H 0.96994 * 120.00328 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99455 * 264.99876 * 12 2 1 29 29 H 1.08996 * 109.46929 * 59.99194 * 17 15 13 30 30 H 1.09002 * 109.46716 * 299.99999 * 17 15 13 31 31 H 1.09002 * 109.47153 * 299.99641 * 18 17 15 32 32 H 1.09001 * 109.46832 * 179.97438 * 18 17 15 33 33 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 34 34 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 35 35 H 1.00899 * 110.99492 * 60.00133 * 22 20 19 36 36 H 1.00895 * 110.99738 * 183.95562 * 22 20 19 37 37 H 1.09002 * 109.47153 * 60.00231 * 23 20 19 38 38 H 1.09001 * 109.47289 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8300 2.6035 8 14 2.3216 -1.1206 4.0078 9 1 3.1467 -2.2872 3.6036 10 1 3.1469 -0.1876 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0184 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4116 15 6 2.6489 -0.7284 -3.5878 16 1 1.9760 -1.5503 -3.8327 17 6 4.0513 -1.2795 -3.3225 18 6 4.5610 -2.0002 -4.5721 19 6 4.6126 -1.0165 -5.7428 20 6 3.2101 -0.4655 -6.0083 21 1 2.5373 -1.2873 -6.2535 22 7 3.2596 0.4786 -7.1326 23 6 2.7005 0.2552 -4.7586 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7091 1.1612 3.4844 28 1 2.2491 -1.6317 -1.1528 29 1 4.0146 -1.9799 -2.4881 30 1 4.7242 -0.4577 -3.0776 31 1 3.8882 -2.8220 -4.8174 32 1 5.5603 -2.3924 -4.3832 33 1 5.2853 -0.1948 -5.4975 34 1 4.9753 -1.5301 -6.6332 35 1 3.5932 0.0259 -7.9704 36 1 2.3583 0.9051 -7.2865 37 1 3.3733 1.0770 -4.5133 38 1 1.7011 0.6474 -4.9475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070502964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -91.950099 kcal Electronic energy + Delta-G solvation = -17698.940031 eV Core-core repulsion = 14959.731518 eV Total energy + Delta-G solvation = -2739.208514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11148 -38.94226 -36.69666 -34.75225 -34.11851 -32.09658 -30.64604 -28.86657 -27.35735 -24.98381 -22.92490 -22.59792 -21.05550 -20.60277 -18.89324 -17.47543 -17.20397 -16.51246 -16.22026 -16.13432 -15.87697 -15.31997 -15.02395 -14.70891 -14.44693 -13.83311 -13.69146 -13.30330 -13.06377 -12.92024 -12.85228 -12.63384 -12.55930 -12.29237 -12.17101 -12.09620 -11.60575 -11.48856 -11.22070 -11.09398 -10.64900 -10.46739 -9.73610 -9.56503 -8.17980 -6.35799 1.44279 1.45127 1.57452 1.83463 2.35493 2.63052 3.12512 3.47500 3.73111 3.77270 4.03993 4.23123 4.25246 4.38890 4.49947 4.52976 4.56130 4.68422 4.75136 4.90269 5.06327 5.08961 5.13111 5.21553 5.26077 5.26751 5.33155 5.43533 5.52415 5.61703 5.68581 5.90756 6.09416 6.29318 6.65991 6.72738 6.98382 7.32339 7.58243 8.88760 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042165 B = 0.005243 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.897927 B = 5339.527827 C = 5807.207754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.703 5.703 13 C 0.498 3.502 14 O -0.605 6.605 15 C -0.093 4.093 16 H 0.117 0.883 17 C -0.109 4.109 18 C -0.107 4.107 19 C -0.111 4.111 20 C 0.098 3.902 21 H 0.050 0.950 22 N -0.858 5.858 23 C -0.086 4.086 24 H 0.009 0.991 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.352 0.648 36 H 0.345 0.655 37 H 0.046 0.954 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -9.623 -15.836 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.487 6.487 15 C -0.114 4.114 16 H 0.135 0.865 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.013 4.013 21 H 0.068 0.932 22 N -0.389 5.389 23 C -0.125 4.125 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.065 0.935 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.937 -8.290 -15.284 18.373 hybrid contribution -0.720 -0.575 0.734 1.178 sum 5.217 -8.865 -14.549 17.818 Atomic orbital electron populations 1.21889 0.98373 0.99470 0.99426 1.18341 0.91110 0.91823 0.82282 0.98837 1.21576 1.32491 1.13514 0.90723 0.90726 1.25835 0.94860 0.95573 1.02438 1.70064 1.37127 1.24040 1.24544 0.85265 0.78091 0.78518 0.78256 1.18179 1.21052 1.20388 1.46280 1.65041 1.14164 1.09698 1.21451 0.77077 0.87037 0.85906 1.90622 1.53324 1.18723 1.86072 1.21303 0.99710 0.99104 0.91311 0.86491 1.21553 0.93126 1.00111 0.99951 1.21490 1.02503 0.97776 0.92739 1.21570 0.95607 0.98718 0.99002 1.21275 0.97137 0.92837 0.90051 0.93188 1.58616 1.34400 1.36956 1.08954 1.21240 1.00698 0.97122 0.93395 0.97142 0.93923 0.91566 0.92573 0.76003 0.90379 0.93280 0.89971 0.89911 0.92759 0.90103 0.83387 0.84178 0.93495 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.25 2.56 44.24 0.11 14.37 16 3 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 4 C -0.54 -29.13 8.73 25.60 0.22 -28.90 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 8 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.70 -29.71 4.96 -446.09 -2.21 -31.92 16 13 C 0.50 20.45 7.12 87.66 0.62 21.08 16 14 O -0.61 -31.12 15.64 -3.03 -0.05 -31.16 16 15 C -0.09 -2.60 2.53 -11.54 -0.03 -2.63 16 16 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.11 -2.57 5.10 30.59 0.16 -2.42 16 18 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 19 C -0.11 -1.95 5.50 30.60 0.17 -1.78 16 20 C 0.10 1.94 3.24 44.92 0.15 2.08 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 N -0.86 -15.65 9.25 -168.68 -1.56 -17.21 16 23 C -0.09 -2.42 4.03 30.60 0.12 -2.30 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.40 14.19 7.96 -92.70 -0.74 13.46 16 29 H 0.08 1.72 7.56 -2.39 -0.02 1.70 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.35 4.65 9.04 -89.69 -0.81 3.84 16 36 H 0.35 5.94 8.99 -89.70 -0.81 5.14 16 37 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -69.27 304.05 -0.02 -69.29 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -1.29 Total: 27.24 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 2.82 Total: -7.16 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -3.53 Total: -102.39 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -69.27 -0.02 -69.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.655 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds