Wall clock time and date at job start Mon Mar 30 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.46969 * 59.99809 * 15 13 12 17 17 C 1.52995 * 109.46956 * 299.99469 * 15 13 12 18 18 C 1.53006 * 109.47051 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46657 * 60.00298 * 18 17 15 20 20 C 1.52995 * 109.47146 * 299.99643 * 19 18 17 21 21 H 1.09002 * 109.47311 * 300.00221 * 20 19 18 22 22 N 1.46899 * 109.47225 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46655 * 179.97438 * 15 13 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 29 29 H 1.08999 * 109.47559 * 299.99979 * 17 15 13 30 30 H 1.09003 * 109.47335 * 60.00558 * 17 15 13 31 31 H 1.08999 * 109.46872 * 300.00339 * 18 17 15 32 32 H 1.09002 * 109.46739 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.46778 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47446 * 60.00392 * 19 18 17 35 35 H 1.00900 * 111.00192 * 60.00101 * 22 20 19 36 36 H 1.00897 * 111.00747 * 183.95617 * 22 20 19 37 37 H 1.08993 * 109.47105 * 299.99335 * 23 15 13 38 38 H 1.08999 * 109.47446 * 60.00274 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6480 -1.1214 3.3986 17 6 1.7043 -1.8823 3.9314 18 6 2.2134 -2.6033 5.1812 19 6 2.2645 -1.6198 6.3521 20 6 3.2091 -0.4664 6.0084 21 1 4.2084 -0.8589 5.8197 22 7 3.2587 0.4776 7.1328 23 6 2.7010 0.2545 4.7587 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1527 29 1 0.7052 -1.4897 4.1206 30 1 1.6675 -2.5827 3.0971 31 1 3.2126 -2.9958 4.9924 32 1 1.5402 -3.4248 5.4263 33 1 2.6277 -2.1333 7.2423 34 1 1.2653 -1.2273 6.5408 35 1 3.5923 0.0250 7.9706 36 1 3.8253 1.2811 6.9059 37 1 3.3742 1.0759 4.5137 38 1 1.7021 0.6474 4.9481 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070502965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:07 Heat of formation + Delta-G solvation = -69.136294 kcal Electronic energy + Delta-G solvation = -17701.538710 eV Core-core repulsion = 14963.319477 eV Total energy + Delta-G solvation = -2738.219233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68028 -37.65998 -34.74508 -33.67651 -32.27436 -30.93872 -28.85828 -27.85007 -25.23468 -23.62393 -21.98899 -20.86733 -19.74696 -19.16834 -17.14093 -15.80723 -15.64495 -15.27780 -15.00794 -14.92829 -14.44973 -14.05496 -13.82889 -13.04691 -12.69054 -12.38194 -12.32018 -11.89772 -11.68931 -11.53775 -11.11051 -11.06776 -10.93451 -10.71370 -10.65681 -10.50052 -10.30875 -10.21501 -10.18550 -9.02977 -8.85143 -8.78432 -8.52077 -7.85122 -6.10291 -4.19696 3.26184 3.31453 3.32544 3.46326 4.06068 4.32415 4.41608 4.74001 4.83509 5.07969 5.17990 5.21324 5.25899 5.40310 5.44425 5.50126 5.60331 5.76531 5.92078 6.04471 6.10810 6.19666 6.22141 6.37289 6.52615 6.85862 7.00444 7.06260 7.18790 7.32519 7.51351 7.59993 7.72456 7.94873 8.18002 8.72264 8.81264 9.19749 9.48222 10.95624 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045009 B = 0.005038 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.947683 B = 5556.151527 C = 5759.734394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.709 5.709 13 C 0.505 3.495 14 O -0.555 6.555 15 C -0.106 4.106 16 H 0.088 0.912 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.112 4.112 20 C 0.091 3.909 21 H 0.032 0.968 22 N -0.848 5.848 23 C -0.090 4.090 24 H 0.089 0.911 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.387 0.613 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.337 0.663 36 H 0.342 0.658 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -6.796 14.992 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.289 3.711 14 O -0.434 6.434 15 C -0.129 4.129 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.020 4.020 21 H 0.050 0.950 22 N -0.378 5.378 23 C -0.128 4.128 24 H 0.108 0.892 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.128 -5.749 14.738 16.126 hybrid contribution 1.485 -1.115 -0.948 2.085 sum 4.613 -6.864 13.790 16.080 Atomic orbital electron populations 1.22065 0.98526 0.99022 1.00835 1.18718 0.91005 0.93954 0.80140 0.93500 1.21189 1.32447 1.13181 0.90405 0.92204 1.24890 0.94831 0.94955 0.99030 1.69900 1.35852 1.22420 1.23937 0.86512 0.79141 0.79585 0.81867 1.20173 1.21127 1.20217 1.46526 1.65098 1.13454 1.10583 1.20381 0.78613 0.87408 0.84677 1.90645 1.51322 1.16240 1.85238 1.21310 1.00533 0.96754 0.94267 0.89379 1.21526 0.99127 0.96288 0.97897 1.21514 1.01383 0.97733 0.94734 1.21562 1.00597 0.95365 0.97500 1.21361 0.97072 0.92480 0.91123 0.94966 1.58672 1.61927 1.11236 1.05930 1.21279 1.03290 0.96860 0.91355 0.89237 0.96689 0.95539 0.92545 0.78037 0.91275 0.91193 0.91968 0.91538 0.92490 0.91026 0.85076 0.84527 0.91597 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.83 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.71 -14.95 4.96 -54.93 -0.27 -15.22 16 13 C 0.50 10.20 7.12 -10.98 -0.08 10.13 16 14 O -0.56 -13.61 15.64 5.56 0.09 -13.52 16 15 C -0.11 -1.56 2.53 -91.77 -0.23 -1.79 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.11 -1.38 5.10 -26.73 -0.14 -1.51 16 18 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 19 C -0.11 -1.14 5.50 -26.73 -0.15 -1.29 16 20 C 0.09 1.00 3.24 -67.74 -0.22 0.78 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 N -0.85 -8.48 9.25 -4.69 -0.04 -8.52 16 23 C -0.09 -1.27 4.03 -26.75 -0.11 -1.38 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.39 7.07 7.96 -40.82 -0.32 6.74 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.84 7.57 -51.93 -0.39 0.44 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.34 2.66 9.04 -39.29 -0.36 2.31 16 36 H 0.34 3.17 8.99 -39.29 -0.35 2.81 16 37 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -30.78 304.05 -7.67 -38.45 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.32 Total: 9.00 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.31 Total: -5.96 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.31 Total: -48.28 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.78 -7.67 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.687 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds