Wall clock time and date at job start Mon Mar 30 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.46969 * 59.99809 * 15 13 12 17 17 C 1.52995 * 109.46956 * 299.99469 * 15 13 12 18 18 C 1.53006 * 109.47051 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46657 * 60.00298 * 18 17 15 20 20 C 1.52995 * 109.47146 * 299.99643 * 19 18 17 21 21 H 1.09002 * 109.47311 * 300.00221 * 20 19 18 22 22 N 1.46899 * 109.47225 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46655 * 179.97438 * 15 13 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 29 29 H 1.08999 * 109.47559 * 299.99979 * 17 15 13 30 30 H 1.09003 * 109.47335 * 60.00558 * 17 15 13 31 31 H 1.08999 * 109.46872 * 300.00339 * 18 17 15 32 32 H 1.09002 * 109.46739 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.46778 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47446 * 60.00392 * 19 18 17 35 35 H 1.00900 * 111.00192 * 60.00101 * 22 20 19 36 36 H 1.00897 * 111.00747 * 183.95617 * 22 20 19 37 37 H 1.08993 * 109.47105 * 299.99335 * 23 15 13 38 38 H 1.08999 * 109.47446 * 60.00274 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6480 -1.1214 3.3986 17 6 1.7043 -1.8823 3.9314 18 6 2.2134 -2.6033 5.1812 19 6 2.2645 -1.6198 6.3521 20 6 3.2091 -0.4664 6.0084 21 1 4.2084 -0.8589 5.8197 22 7 3.2587 0.4776 7.1328 23 6 2.7010 0.2545 4.7587 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1527 29 1 0.7052 -1.4897 4.1206 30 1 1.6675 -2.5827 3.0971 31 1 3.2126 -2.9958 4.9924 32 1 1.5402 -3.4248 5.4263 33 1 2.6277 -2.1333 7.2423 34 1 1.2653 -1.2273 6.5408 35 1 3.5923 0.0250 7.9706 36 1 3.8253 1.2811 6.9059 37 1 3.3742 1.0759 4.5137 38 1 1.7021 0.6474 4.9481 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070502965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:07 Heat of formation + Delta-G solvation = -91.825051 kcal Electronic energy + Delta-G solvation = -17702.522569 eV Core-core repulsion = 14963.319477 eV Total energy + Delta-G solvation = -2739.203091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11403 -38.94245 -36.69671 -34.75245 -34.11525 -32.09782 -30.64191 -28.87913 -27.34844 -24.97155 -22.91638 -22.61791 -21.06101 -20.59686 -18.87501 -17.48451 -17.23291 -16.49600 -16.24895 -16.03051 -15.82932 -15.53296 -15.01463 -14.59890 -14.31951 -14.09674 -13.55705 -13.30390 -13.09102 -12.86770 -12.80960 -12.70888 -12.54028 -12.27542 -12.16269 -12.13672 -11.60521 -11.49648 -11.21700 -11.11782 -10.63805 -10.45501 -9.73879 -9.56938 -8.17496 -6.35695 1.44875 1.47293 1.55185 1.83572 2.35423 2.63283 3.12621 3.47347 3.72959 3.77291 4.04112 4.23090 4.24970 4.39013 4.49832 4.53079 4.56328 4.68482 4.75684 4.90578 5.06551 5.08773 5.13280 5.21359 5.25980 5.26703 5.33181 5.43354 5.52412 5.61378 5.68481 5.90857 6.09400 6.28840 6.65527 6.72265 6.98431 7.32358 7.58256 8.88751 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045009 B = 0.005038 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.947683 B = 5556.151527 C = 5759.734394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.703 5.703 13 C 0.498 3.502 14 O -0.605 6.605 15 C -0.093 4.093 16 H 0.115 0.885 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.111 4.111 20 C 0.098 3.902 21 H 0.049 0.951 22 N -0.857 5.857 23 C -0.086 4.086 24 H 0.066 0.934 25 H 0.008 0.992 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.352 0.648 36 H 0.345 0.655 37 H 0.048 0.952 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -9.642 15.808 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.487 6.487 15 C -0.115 4.115 16 H 0.133 0.867 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.013 4.013 21 H 0.067 0.933 22 N -0.389 5.389 23 C -0.124 4.124 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.067 0.933 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.471 -8.641 15.593 18.379 hybrid contribution 1.054 -0.144 -1.164 1.576 sum 5.524 -8.785 14.429 17.773 Atomic orbital electron populations 1.21882 0.98407 0.99426 0.99350 1.18329 0.91083 0.91821 0.82247 0.98796 1.21516 1.32677 1.13600 0.90754 0.90751 1.25839 0.94834 0.95567 1.02430 1.70060 1.37010 1.23978 1.24671 0.85363 0.78630 0.78720 0.77410 1.18714 1.21234 1.19542 1.46281 1.65083 1.14160 1.09669 1.21447 0.77262 0.86967 0.85782 1.90620 1.53289 1.18761 1.86067 1.21302 1.02052 0.97018 0.91125 0.86743 1.21550 0.97664 0.95508 0.99908 1.21494 1.02693 0.97607 0.92755 1.21567 0.99518 0.95111 0.98667 1.21269 0.97872 0.92466 0.89730 0.93342 1.58620 1.62500 1.11459 1.06306 1.21227 1.01383 0.96724 0.93113 0.91568 0.97271 0.93966 0.92558 0.76002 0.93044 0.90298 0.90111 0.89791 0.90135 0.92638 0.83393 0.84207 0.93345 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.30 2.56 44.24 0.11 14.42 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.25 8.73 25.60 0.22 -29.03 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 9 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 N -0.70 -29.73 4.96 -446.10 -2.21 -31.95 16 13 C 0.50 20.48 7.12 87.66 0.62 21.10 16 14 O -0.61 -31.14 15.64 -3.01 -0.05 -31.18 16 15 C -0.09 -2.63 2.53 -11.54 -0.03 -2.65 16 16 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.11 -2.47 5.10 30.59 0.16 -2.32 16 18 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 19 C -0.11 -1.91 5.50 30.59 0.17 -1.75 16 20 C 0.10 1.94 3.24 44.90 0.15 2.08 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 N -0.86 -15.70 9.25 -168.75 -1.56 -17.26 16 23 C -0.09 -2.43 4.03 30.58 0.12 -2.30 16 24 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.40 14.19 7.96 -92.71 -0.74 13.46 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.67 7.57 -2.39 -0.02 1.65 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.35 4.67 9.04 -89.69 -0.81 3.86 16 36 H 0.34 6.01 8.99 -89.70 -0.81 5.20 16 37 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -69.11 304.05 -0.02 -69.13 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.29 Total: 27.43 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 2.82 Total: -7.03 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.53 Total: -102.42 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.05 Total: -31.18 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -69.11 -0.02 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070502965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.691 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds