Wall clock time and date at job start Mon Mar 30 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47414 * 2 1 4 4 C 1.46500 * 119.99838 * 274.70678 * 3 2 1 5 5 C 1.50707 * 109.47230 * 276.76540 * 4 3 2 6 6 H 1.07998 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99430 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00523 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99432 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47026 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46781 * 119.99827 * 9 7 5 12 12 H 1.48499 * 109.47292 * 240.00152 * 9 7 5 13 13 C 1.34775 * 120.00291 * 94.71304 * 3 2 1 14 14 O 1.21282 * 119.99881 * 6.13077 * 13 3 2 15 15 C 1.50697 * 120.00106 * 186.13765 * 13 3 2 16 16 C 1.52994 * 109.90884 * 286.98637 * 15 13 3 17 17 C 1.53992 * 109.91802 * 165.87995 * 15 13 3 18 18 C 1.54596 * 105.14321 * 239.22770 * 17 15 13 19 19 C 1.54941 * 102.92181 * 338.04260 * 18 17 15 20 20 N 1.47905 * 110.08011 * 48.19326 * 15 13 3 21 21 H 1.09007 * 109.46627 * 304.99965 * 1 2 3 22 22 H 1.08999 * 109.47181 * 64.99053 * 1 2 3 23 23 H 1.08999 * 109.47458 * 184.99850 * 1 2 3 24 24 H 1.08998 * 109.47019 * 239.99419 * 2 1 3 25 25 H 1.09005 * 109.46851 * 119.99927 * 2 1 3 26 26 H 1.09004 * 109.46808 * 36.76110 * 4 3 2 27 27 H 1.08993 * 109.47357 * 156.76078 * 4 3 2 28 28 H 0.96996 * 120.00168 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47065 * 294.98123 * 16 15 13 30 30 H 1.08997 * 109.47044 * 54.97938 * 16 15 13 31 31 H 1.09004 * 109.47118 * 174.97910 * 16 15 13 32 32 H 1.09004 * 110.31084 * 358.14241 * 17 15 13 33 33 H 1.08995 * 110.30960 * 120.30917 * 17 15 13 34 34 H 1.09001 * 110.73011 * 96.39826 * 18 17 15 35 35 H 1.09000 * 110.72591 * 219.69025 * 18 17 15 36 36 H 1.09002 * 110.66835 * 278.98122 * 19 18 17 37 37 H 1.08991 * 110.81547 * 155.91836 * 19 18 17 38 38 H 1.00901 * 111.00134 * 24.26047 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1644 2.1064 -1.2645 5 6 3.4855 1.7520 -1.8973 6 1 4.1499 1.0564 -1.4064 7 6 3.8456 2.3158 -3.1029 8 7 3.0362 3.1624 -3.7008 9 14 5.4834 1.8770 -3.8869 10 1 6.2034 0.9093 -3.0206 11 1 5.2463 1.2663 -5.2196 12 1 6.3021 3.1059 -4.0440 13 6 2.3335 1.9846 1.1632 14 8 2.3196 1.3518 2.1978 15 6 2.7029 3.4455 1.1783 16 6 4.0986 3.6362 0.5815 17 6 2.6724 3.9794 2.6224 18 6 1.6339 5.1245 2.6078 19 6 1.5835 5.5275 1.1126 20 7 1.7134 4.2275 0.4057 21 1 -0.3633 0.5895 0.8419 22 1 -0.3633 0.4345 -0.9313 23 1 -0.3634 -1.0237 0.0895 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.3531 1.8297 -1.9378 27 1 2.1288 3.1791 -1.0743 28 1 3.2897 3.5593 -4.5488 29 1 4.8363 3.1497 1.2198 30 1 4.1316 3.1938 -0.4141 31 1 4.3225 4.7008 0.5137 32 1 2.3592 3.1935 3.3098 33 1 3.6531 4.3617 2.9052 34 1 0.6606 4.7670 2.9438 35 1 1.9720 5.9598 3.2211 36 1 2.4158 6.1857 0.8632 37 1 0.6330 6.0032 0.8714 38 1 0.8264 3.7483 0.3643 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070618941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:40 Heat of formation + Delta-G solvation = -47.642013 kcal Electronic energy + Delta-G solvation = -18785.710576 eV Core-core repulsion = 16048.423405 eV Total energy + Delta-G solvation = -2737.287171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61657 -38.72498 -36.99984 -34.66222 -32.81856 -31.36872 -30.67258 -28.96054 -26.93851 -24.87192 -24.70030 -22.17137 -21.74126 -19.62330 -18.59424 -18.12395 -17.35561 -16.46577 -16.16915 -15.87955 -15.62050 -15.04277 -14.51586 -14.44603 -14.14887 -14.01412 -13.65617 -13.23743 -13.09598 -12.91006 -12.84732 -12.67037 -12.60465 -12.45116 -12.15139 -11.94887 -11.87382 -11.76753 -11.56100 -11.43050 -10.63157 -10.39437 -9.52471 -9.29488 -8.09062 -6.17964 1.40988 1.44679 1.53613 1.66614 2.32929 2.48931 3.15044 3.25406 3.60927 3.85793 3.95909 4.16459 4.26237 4.39093 4.47640 4.54016 4.55734 4.78612 4.82364 4.85646 4.92753 4.98517 5.03479 5.10205 5.12954 5.18506 5.26285 5.33256 5.49965 5.71496 5.77889 5.94932 5.95856 6.22786 6.38489 6.65335 6.95651 7.30604 7.48821 8.95894 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.009899 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.403668 B = 2827.903887 C = 3468.937766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.217 3.783 5 C -0.533 4.533 6 H 0.042 0.958 7 C 0.027 3.973 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.507 3.493 14 O -0.597 6.597 15 C 0.095 3.905 16 C -0.147 4.147 17 C -0.138 4.138 18 C -0.143 4.143 19 C 0.039 3.961 20 N -0.656 5.656 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.004 0.996 27 H 0.107 0.893 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 3.278 7.954 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 N -0.317 5.317 4 C 0.096 3.904 5 C -0.572 4.572 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.480 6.480 15 C 0.002 3.998 16 C -0.205 4.205 17 C -0.177 4.177 18 C -0.182 4.182 19 C -0.089 4.089 20 N -0.285 5.285 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.022 0.978 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.148 3.260 7.726 8.957 hybrid contribution 0.474 -0.777 -0.016 0.910 sum -2.674 2.484 7.710 8.530 Atomic orbital electron populations 1.21984 0.94361 1.02922 1.01415 1.21422 0.95431 0.83356 1.01938 1.48296 1.61655 1.13894 1.07854 1.20029 0.94516 0.96892 0.78913 1.21559 1.04031 1.26114 1.05519 0.93986 1.25476 0.99732 0.94984 0.97220 1.70020 1.37475 1.29986 1.17396 0.85721 0.80751 0.78109 0.78341 1.20012 1.20648 1.20332 1.21044 0.76030 0.90563 0.82855 1.90534 1.56504 1.67327 1.33616 1.21712 0.95753 0.88438 0.93946 1.22072 0.92403 1.02531 1.03485 1.22824 1.01285 0.98839 0.94764 1.23053 0.98644 0.98085 0.98453 1.23294 1.03211 0.91684 0.90707 1.62933 1.11799 1.04901 1.48906 0.93561 0.92727 0.89584 0.91125 0.91553 0.97818 0.87571 0.92657 0.93387 0.89554 0.91242 0.91315 0.90014 0.91444 0.88510 0.89860 0.88816 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 10.24 71.98 0.74 -3.93 16 2 C 0.10 3.89 6.24 86.38 0.54 4.43 16 3 N -0.59 -25.33 2.43 -826.15 -2.01 -27.34 16 4 C 0.22 10.40 4.30 85.64 0.37 10.76 16 5 C -0.53 -28.01 6.95 25.60 0.18 -27.83 16 6 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 7 C 0.03 1.40 5.46 84.66 0.46 1.86 16 8 N -0.91 -50.09 13.29 21.45 0.28 -49.80 16 9 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.51 21.54 6.31 87.66 0.55 22.10 16 14 O -0.60 -27.40 14.81 -3.04 -0.04 -27.45 16 15 C 0.10 3.50 0.68 2.92 0.00 3.50 16 16 C -0.15 -5.73 8.32 71.98 0.60 -5.13 16 17 C -0.14 -4.23 6.11 31.47 0.19 -4.03 16 18 C -0.14 -3.40 7.06 31.80 0.22 -3.18 16 19 C 0.04 1.02 7.54 86.65 0.65 1.67 16 20 N -0.66 -22.54 4.34 -462.78 -2.01 -24.55 16 21 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.07 2.75 8.11 -2.39 -0.02 2.73 16 25 H 0.07 2.58 7.22 -2.38 -0.02 2.56 16 26 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 27 H 0.11 5.12 4.00 -2.39 -0.01 5.11 16 28 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 4.01 4.19 -2.39 -0.01 4.00 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.07 2.36 6.54 -2.38 -0.02 2.35 16 33 H 0.08 2.30 7.68 -2.39 -0.02 2.28 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.34 11.58 7.99 -89.69 -0.72 10.87 16 Total: -1.00 -59.99 298.18 3.08 -56.91 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.33 Total: 27.56 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.51 Total: 0.23 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.73 Total: -101.69 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.45 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -59.99 3.08 -56.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070618941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.267 kcal (2) G-P(sol) polarization free energy of solvation -59.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds