Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47502 * 2 1 4 4 C 1.46501 * 120.00012 * 274.96851 * 3 2 1 5 5 C 1.50707 * 109.46701 * 269.99421 * 4 3 2 6 6 H 1.08000 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99798 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00398 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99984 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46946 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47061 * 119.99734 * 9 7 5 12 12 H 1.48500 * 109.47031 * 240.00126 * 9 7 5 13 13 C 1.34780 * 119.99994 * 94.95693 * 3 2 1 14 14 O 1.21280 * 119.99997 * 4.77751 * 13 3 2 15 15 C 1.50701 * 119.99657 * 184.77691 * 13 3 2 16 16 C 1.53001 * 110.06940 * 79.67209 * 15 13 3 17 17 C 1.53996 * 109.91468 * 200.87563 * 15 13 3 18 18 C 1.54595 * 105.13950 * 118.12504 * 17 15 13 19 19 C 1.54932 * 102.92376 * 338.04473 * 18 17 15 20 20 N 1.47900 * 109.91606 * 318.46263 * 15 13 3 21 21 H 1.08996 * 109.46862 * 175.00651 * 1 2 3 22 22 H 1.09007 * 109.46863 * 295.00290 * 1 2 3 23 23 H 1.08997 * 109.47473 * 55.00384 * 1 2 3 24 24 H 1.08998 * 109.47337 * 239.99934 * 2 1 3 25 25 H 1.09003 * 109.47682 * 119.99965 * 2 1 3 26 26 H 1.09001 * 109.46947 * 29.99059 * 4 3 2 27 27 H 1.08991 * 109.47316 * 149.99212 * 4 3 2 28 28 H 0.97000 * 120.00450 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46566 * 300.24715 * 16 15 13 30 30 H 1.08997 * 109.47273 * 60.24202 * 16 15 13 31 31 H 1.08998 * 109.47106 * 180.25184 * 16 15 13 32 32 H 1.09001 * 110.30635 * 359.21151 * 17 15 13 33 33 H 1.09000 * 110.39290 * 237.08433 * 17 15 13 34 34 H 1.09003 * 110.72515 * 219.68216 * 18 17 15 35 35 H 1.09007 * 110.87400 * 96.47655 * 18 17 15 36 36 H 1.09003 * 110.66668 * 278.97511 * 19 18 17 37 37 H 1.09004 * 110.80953 * 155.91786 * 19 18 17 38 38 H 1.00907 * 110.99893 * 145.47064 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5419 1.8859 -1.8203 6 1 4.2453 1.2646 -1.2860 7 6 3.9088 2.4756 -3.0113 8 7 3.0520 3.2317 -3.6622 9 14 5.6226 2.1992 -3.7013 10 1 6.3882 1.3155 -2.7858 11 1 5.5210 1.5594 -5.0375 12 1 6.3212 3.5034 -3.8287 13 6 2.3382 1.9829 1.1629 14 8 2.3046 1.3549 2.1999 15 6 2.7374 3.4361 1.1744 16 6 1.4927 4.3231 1.1033 17 6 3.5336 3.7511 2.4544 18 6 4.9284 4.2004 1.9618 19 6 5.0122 3.5794 0.5449 20 7 3.6270 3.7233 0.0283 21 1 -0.3633 -1.0237 -0.0894 22 1 -0.3633 0.4344 0.9314 23 1 -0.3634 0.5894 -0.8418 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.4181 1.7455 -1.9763 27 1 2.0045 3.1732 -1.0897 28 1 3.3103 3.6469 -4.5000 29 1 0.9440 4.1061 0.1869 30 1 0.8549 4.1239 1.9645 31 1 1.7927 5.3710 1.1078 32 1 3.6207 2.8592 3.0749 33 1 3.0528 4.5543 3.0128 34 1 5.7121 3.8003 2.6053 35 1 4.9908 5.2875 1.9109 36 1 5.2943 2.5281 0.6016 37 1 5.7148 4.1318 -0.0791 38 1 3.4688 4.6540 -0.3278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070618942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = -21.834167 kcal Electronic energy + Delta-G solvation = -19014.669850 eV Core-core repulsion = 16278.501791 eV Total energy + Delta-G solvation = -2736.168059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87412 -37.09664 -35.09689 -32.45344 -31.40999 -29.98209 -29.17386 -26.74465 -25.14791 -23.38756 -22.85631 -21.13233 -20.09021 -17.71570 -16.39056 -15.81481 -15.65385 -15.31422 -14.59432 -14.19681 -13.98111 -13.36056 -13.10027 -12.76287 -12.64872 -12.29809 -12.02151 -11.73155 -11.48634 -11.26736 -11.21879 -11.10581 -10.76361 -10.71833 -10.67058 -10.38038 -10.34642 -10.24321 -9.89060 -9.41947 -9.00093 -8.24153 -7.48593 -7.42034 -5.85731 -3.78960 3.34248 3.43324 3.45201 3.52172 4.11516 4.57206 4.70302 5.15144 5.20662 5.42639 5.51025 5.52716 5.63979 5.73410 5.80355 5.91335 5.95664 5.98477 6.07087 6.19501 6.24645 6.34943 6.37333 6.43298 6.50167 6.54358 6.72066 6.73073 7.05157 7.37618 7.63265 7.86208 8.07548 8.10206 8.47948 8.58221 9.09412 9.23998 9.76877 11.23814 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.012059 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.353591 B = 2321.326623 C = 3157.666626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.582 5.582 4 C 0.249 3.751 5 C -0.460 4.460 6 H 0.050 0.950 7 C 0.059 3.941 8 N -0.906 5.906 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.535 3.465 14 O -0.586 6.586 15 C 0.080 3.920 16 C -0.144 4.144 17 C -0.135 4.135 18 C -0.160 4.160 19 C 0.051 3.949 20 N -0.602 5.602 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 2.164 7.228 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.015 4.015 3 N -0.310 5.310 4 C 0.130 3.870 5 C -0.500 4.500 6 H 0.068 0.932 7 C -0.140 4.140 8 N -0.548 5.548 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.322 3.678 14 O -0.468 6.468 15 C -0.014 4.014 16 C -0.202 4.202 17 C -0.175 4.175 18 C -0.199 4.199 19 C -0.079 4.079 20 N -0.230 5.230 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.278 1.273 7.191 7.413 hybrid contribution 1.208 0.775 -0.065 1.437 sum -0.070 2.049 7.125 7.414 Atomic orbital electron populations 1.22105 0.97064 1.01134 1.01723 1.21245 0.93224 0.84681 1.02301 1.48201 1.61383 1.12799 1.08654 1.19555 0.96510 0.92993 0.77979 1.21156 0.97808 1.27134 1.03889 0.93174 1.24681 0.96232 0.95988 0.97051 1.69913 1.34376 1.33908 1.16581 0.86721 0.85877 0.77572 0.78774 1.20222 1.21675 1.21523 1.20144 0.76151 0.88427 0.83076 1.90540 1.56936 1.66160 1.33183 1.21727 0.94970 0.93454 0.91292 1.22021 0.96769 0.98451 1.02968 1.22800 0.94919 1.02155 0.97625 1.23210 0.97169 1.00148 0.99373 1.23030 0.92000 1.01144 0.91697 1.63471 1.01239 1.32585 1.25719 0.92573 0.93235 0.92411 0.90795 0.91192 0.96614 0.92381 0.93508 0.90847 0.92242 0.92003 0.89701 0.91780 0.91647 0.92134 0.90652 0.91256 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.11 2.10 6.22 -4.04 -0.03 2.08 16 3 N -0.58 -12.50 2.46 -175.06 -0.43 -12.93 16 4 C 0.25 5.85 4.69 -5.19 -0.02 5.83 16 5 C -0.46 -11.72 7.12 -34.44 -0.25 -11.97 16 6 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.91 -24.78 13.29 55.43 0.74 -24.05 16 9 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.54 11.38 6.66 -10.98 -0.07 11.31 16 14 O -0.59 -13.57 14.93 5.56 0.08 -13.48 16 15 C 0.08 1.45 0.68 -131.68 -0.09 1.36 16 16 C -0.14 -2.27 8.02 37.16 0.30 -1.97 16 17 C -0.14 -2.20 6.10 -25.37 -0.15 -2.36 16 18 C -0.16 -2.36 7.06 -24.87 -0.18 -2.53 16 19 C 0.05 0.90 7.32 -1.90 -0.01 0.89 16 20 N -0.60 -11.43 2.23 -97.62 -0.22 -11.64 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 25 H 0.07 1.37 7.22 -51.93 -0.38 0.99 16 26 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.06 1.37 4.23 -51.93 -0.22 1.15 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.07 1.24 6.71 -51.93 -0.35 0.89 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.08 1.55 6.63 -51.93 -0.34 1.21 16 33 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.34 6.10 8.39 -39.29 -0.33 5.77 16 LS Contribution 299.75 15.07 4.52 4.52 Total: -1.00 -28.63 299.75 -6.76 -35.39 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.21 Total: 4.53 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.22 Total: 1.81 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.09 Total: -48.62 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.63 -6.76 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070618942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.552 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds