Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47170 * 239.99923 * 2 1 3 5 5 H 1.07996 * 119.99766 * 239.99391 * 4 2 1 6 6 C 1.37882 * 120.00215 * 60.00307 * 4 2 1 7 7 N 1.31517 * 119.99786 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00207 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46858 * 89.99296 * 8 6 4 10 10 H 1.48494 * 109.47007 * 209.99651 * 8 6 4 11 11 H 1.48504 * 109.46744 * 329.99617 * 8 6 4 12 12 N 1.46491 * 109.47110 * 119.99470 * 2 1 3 13 13 C 1.46507 * 120.00064 * 59.68101 * 12 2 1 14 14 C 1.34777 * 120.00351 * 239.67634 * 12 2 1 15 15 O 1.21284 * 120.00360 * 186.05516 * 14 12 2 16 16 C 1.50701 * 119.99815 * 6.06041 * 14 12 2 17 17 C 1.53002 * 110.41895 * 287.02926 * 16 14 12 18 18 C 1.54905 * 110.37527 * 164.72104 * 16 14 12 19 19 C 1.55140 * 101.64923 * 278.24047 * 18 16 14 20 20 C 1.54320 * 103.02032 * 324.34273 * 19 18 16 21 21 N 1.47437 * 107.22993 * 22.28710 * 20 19 18 22 22 H 1.09008 * 109.46985 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47574 * 299.99777 * 1 2 3 24 24 H 1.09003 * 109.47146 * 60.00301 * 1 2 3 25 25 H 0.96999 * 120.00098 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.46949 * 264.66661 * 13 12 2 27 27 H 1.09000 * 109.46838 * 24.66290 * 13 12 2 28 28 H 1.09002 * 109.47440 * 144.66604 * 13 12 2 29 29 H 1.09001 * 109.47340 * 176.32733 * 17 16 14 30 30 H 1.08999 * 109.47075 * 296.32806 * 17 16 14 31 31 H 1.09000 * 109.47336 * 56.32811 * 17 16 14 32 32 H 1.08992 * 110.99345 * 160.14707 * 18 16 14 33 33 H 1.09005 * 110.99230 * 36.32207 * 18 16 14 34 34 H 1.09006 * 110.70574 * 205.96443 * 19 18 16 35 35 H 1.08998 * 110.71267 * 82.73191 * 19 18 16 36 36 H 1.08998 * 109.89166 * 262.88037 * 20 19 18 37 37 H 1.08997 * 109.89051 * 141.69123 * 20 19 18 38 38 H 1.00901 * 111.00197 * 123.25804 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6035 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6310 -1.7565 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 1.6586 -2.0910 1.4317 14 6 2.7985 -0.0374 2.0800 15 8 3.2927 -0.6367 3.0115 16 6 3.0568 1.4377 1.9110 17 6 4.0114 1.6817 0.7404 18 6 3.6394 2.0362 3.2156 19 6 2.3560 2.2603 4.0578 20 6 1.3121 2.6712 2.9981 21 7 1.7856 2.1618 1.6981 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 -3.4845 26 1 0.7870 -2.1374 2.0845 27 1 1.4266 -2.5713 0.4811 28 1 2.4946 -2.6063 1.9046 29 1 4.1362 2.7542 0.5908 30 1 4.9790 1.2306 0.9605 31 1 3.5992 1.2343 -0.1640 32 1 4.1474 2.9803 3.0193 33 1 4.3088 1.3286 3.7049 34 1 2.5053 3.0610 4.7823 35 1 2.0564 1.3387 4.5568 36 1 1.2277 3.7573 2.9624 37 1 0.3451 2.2298 3.2394 38 1 1.0951 1.5625 1.2713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070619358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = -20.316157 kcal Electronic energy + Delta-G solvation = -19024.981629 eV Core-core repulsion = 16288.879396 eV Total energy + Delta-G solvation = -2736.102233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24667 -36.95242 -35.79653 -32.68432 -31.25370 -29.96477 -29.12334 -26.40456 -25.51607 -25.02360 -22.11657 -20.89526 -20.45865 -18.23385 -16.94737 -16.39718 -15.47220 -14.88052 -14.78583 -14.39556 -14.15418 -13.23666 -13.06523 -12.87046 -12.56819 -12.26383 -11.80757 -11.64329 -11.56028 -11.39514 -11.28902 -11.04237 -10.97261 -10.86638 -10.76729 -10.56740 -10.40719 -10.23707 -10.05939 -9.41455 -9.17023 -8.54050 -7.93518 -7.70168 -6.18817 -4.27573 3.21093 3.26930 3.29420 3.34163 3.90083 4.30416 4.56842 4.97438 5.02115 5.12077 5.30423 5.33138 5.69549 5.79774 5.98978 6.04827 6.11796 6.12950 6.18229 6.27464 6.36053 6.39955 6.48314 6.50063 6.53102 6.60142 6.75936 6.97854 7.12492 7.26499 7.36112 7.63519 7.75318 7.85809 8.09212 8.39176 8.72828 8.94171 9.40056 10.85506 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.008665 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.503778 B = 3230.624350 C = 3393.270709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.228 3.772 3 H 0.088 0.912 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.092 3.908 14 C 0.492 3.508 15 O -0.572 6.572 16 C 0.093 3.907 17 C -0.140 4.140 18 C -0.107 4.107 19 C -0.141 4.141 20 C 0.042 3.958 21 N -0.675 5.675 22 H 0.035 0.965 23 H 0.009 0.991 24 H 0.099 0.901 25 H 0.265 0.735 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 2.479 6.807 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.127 3.873 3 H 0.106 0.894 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.051 4.051 14 C 0.278 3.722 15 O -0.452 6.452 16 C -0.001 4.001 17 C -0.197 4.197 18 C -0.146 4.146 19 C -0.180 4.180 20 C -0.088 4.088 21 N -0.314 5.314 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.057 2.869 6.885 7.533 hybrid contribution -0.226 -1.360 -0.561 1.488 sum 0.831 1.509 6.323 6.554 Atomic orbital electron populations 1.22226 0.98260 1.00166 1.00730 1.19634 0.91447 0.95167 0.81035 0.89447 1.21266 1.32243 1.13435 0.89935 0.92027 1.24875 0.94763 0.94911 0.98938 1.69851 1.35812 1.22280 1.24053 0.86499 0.79315 0.79381 0.82303 1.20610 1.21012 1.19863 1.48345 1.48539 1.12030 1.23331 1.21416 0.99051 0.83209 1.01467 1.21281 0.78658 0.90235 0.81985 1.90557 1.51749 1.69351 1.33523 1.21914 0.92362 0.88501 0.97293 1.21942 0.97210 1.02540 0.98043 1.22616 0.97445 1.00828 0.93685 1.22773 0.95818 1.01376 0.97995 1.22637 0.96790 1.00630 0.88713 1.62397 1.06098 1.41162 1.21766 0.94570 0.97197 0.88215 0.92471 0.94396 0.90230 0.92388 0.91507 0.92801 0.89032 0.90447 0.89725 0.91049 0.91507 0.90805 0.93672 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.48 37.16 0.32 -3.11 16 2 C 0.23 5.22 0.92 -69.09 -0.06 5.15 16 3 H 0.09 2.08 3.27 -51.92 -0.17 1.91 16 4 C -0.53 -13.34 7.59 -34.44 -0.26 -13.60 16 5 H 0.06 1.59 7.45 -52.49 -0.39 1.20 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -22.87 11.32 55.43 0.63 -22.24 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 N -0.59 -12.82 2.70 -175.26 -0.47 -13.29 16 13 C 0.09 1.81 9.36 59.85 0.56 2.37 16 14 C 0.49 10.59 6.39 -10.98 -0.07 10.52 16 15 O -0.57 -13.20 15.30 5.55 0.08 -13.12 16 16 C 0.09 1.77 0.67 -131.23 -0.09 1.68 16 17 C -0.14 -2.63 8.53 37.16 0.32 -2.31 16 18 C -0.11 -1.74 5.76 -24.59 -0.14 -1.88 16 19 C -0.14 -2.10 6.72 -24.91 -0.17 -2.27 16 20 C 0.04 0.65 7.58 -2.84 -0.02 0.63 16 21 N -0.67 -12.66 6.19 -98.35 -0.61 -13.27 16 22 H 0.04 0.77 7.66 -51.92 -0.40 0.37 16 23 H 0.01 0.19 6.96 -51.93 -0.36 -0.17 16 24 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.55 7.13 -51.93 -0.37 1.18 16 28 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.99 5.54 -51.93 -0.29 1.71 16 32 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.08 1.44 7.21 -51.93 -0.37 1.06 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.36 7.31 3.57 -39.29 -0.14 7.17 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -27.12 289.39 -6.46 -33.58 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.71 Total: 10.15 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 0.28 Total: -1.18 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.45 Total: -48.81 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.12 -6.46 -33.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.259 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds