Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47170 * 239.99923 * 2 1 3 5 5 H 1.07996 * 119.99766 * 239.99391 * 4 2 1 6 6 C 1.37882 * 120.00215 * 60.00307 * 4 2 1 7 7 N 1.31517 * 119.99786 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00207 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46858 * 89.99296 * 8 6 4 10 10 H 1.48494 * 109.47007 * 209.99651 * 8 6 4 11 11 H 1.48504 * 109.46744 * 329.99617 * 8 6 4 12 12 N 1.46491 * 109.47110 * 119.99470 * 2 1 3 13 13 C 1.46507 * 120.00064 * 59.68101 * 12 2 1 14 14 C 1.34777 * 120.00351 * 239.67634 * 12 2 1 15 15 O 1.21284 * 120.00360 * 186.05516 * 14 12 2 16 16 C 1.50701 * 119.99815 * 6.06041 * 14 12 2 17 17 C 1.53002 * 110.41895 * 287.02926 * 16 14 12 18 18 C 1.54905 * 110.37527 * 164.72104 * 16 14 12 19 19 C 1.55140 * 101.64923 * 278.24047 * 18 16 14 20 20 C 1.54320 * 103.02032 * 324.34273 * 19 18 16 21 21 N 1.47437 * 107.22993 * 22.28710 * 20 19 18 22 22 H 1.09008 * 109.46985 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47574 * 299.99777 * 1 2 3 24 24 H 1.09003 * 109.47146 * 60.00301 * 1 2 3 25 25 H 0.96999 * 120.00098 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.46949 * 264.66661 * 13 12 2 27 27 H 1.09000 * 109.46838 * 24.66290 * 13 12 2 28 28 H 1.09002 * 109.47440 * 144.66604 * 13 12 2 29 29 H 1.09001 * 109.47340 * 176.32733 * 17 16 14 30 30 H 1.08999 * 109.47075 * 296.32806 * 17 16 14 31 31 H 1.09000 * 109.47336 * 56.32811 * 17 16 14 32 32 H 1.08992 * 110.99345 * 160.14707 * 18 16 14 33 33 H 1.09005 * 110.99230 * 36.32207 * 18 16 14 34 34 H 1.09006 * 110.70574 * 205.96443 * 19 18 16 35 35 H 1.08998 * 110.71267 * 82.73191 * 19 18 16 36 36 H 1.08998 * 109.89166 * 262.88037 * 20 19 18 37 37 H 1.08997 * 109.89051 * 141.69123 * 20 19 18 38 38 H 1.00901 * 111.00197 * 123.25804 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6035 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6310 -1.7565 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 1.6586 -2.0910 1.4317 14 6 2.7985 -0.0374 2.0800 15 8 3.2927 -0.6367 3.0115 16 6 3.0568 1.4377 1.9110 17 6 4.0114 1.6817 0.7404 18 6 3.6394 2.0362 3.2156 19 6 2.3560 2.2603 4.0578 20 6 1.3121 2.6712 2.9981 21 7 1.7856 2.1618 1.6981 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 -3.4845 26 1 0.7870 -2.1374 2.0845 27 1 1.4266 -2.5713 0.4811 28 1 2.4946 -2.6063 1.9046 29 1 4.1362 2.7542 0.5908 30 1 4.9790 1.2306 0.9605 31 1 3.5992 1.2343 -0.1640 32 1 4.1474 2.9803 3.0193 33 1 4.3088 1.3286 3.7049 34 1 2.5053 3.0610 4.7823 35 1 2.0564 1.3387 4.5568 36 1 1.2277 3.7573 2.9624 37 1 0.3451 2.2298 3.2394 38 1 1.0951 1.5625 1.2713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070619358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = -37.170900 kcal Electronic energy + Delta-G solvation = -19025.712506 eV Core-core repulsion = 16288.879396 eV Total energy + Delta-G solvation = -2736.833109 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81482 -38.43940 -37.56241 -34.56970 -32.65471 -31.44375 -30.79147 -28.01581 -27.34329 -26.49425 -23.80320 -22.24929 -21.98784 -19.79096 -18.73127 -18.04348 -17.17053 -16.53070 -16.33283 -16.00236 -15.69627 -14.83976 -14.59743 -14.50318 -13.97206 -13.82210 -13.56183 -13.28719 -13.04548 -12.92962 -12.79580 -12.75148 -12.69305 -12.53224 -12.20767 -12.12336 -11.99890 -11.78859 -11.62716 -11.16416 -10.86639 -10.45374 -9.44611 -9.39998 -8.12089 -6.26001 1.42877 1.46303 1.53544 1.62609 2.26797 2.46216 3.12972 3.21898 3.53190 3.75547 3.81656 4.12844 4.34304 4.51257 4.53207 4.59034 4.65669 4.74161 4.77415 4.86417 4.87905 4.90273 4.96449 4.98703 5.04628 5.10782 5.29226 5.34110 5.43388 5.55726 5.73296 5.86099 5.97293 6.19699 6.31881 6.62084 6.82873 7.22407 7.44916 8.90786 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.008665 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.503778 B = 3230.624350 C = 3393.270709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.083 0.917 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.032 3.968 7 N -0.900 5.900 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.277 1.277 12 N -0.598 5.598 13 C 0.091 3.909 14 C 0.486 3.514 15 O -0.592 6.592 16 C 0.088 3.912 17 C -0.134 4.134 18 C -0.104 4.104 19 C -0.134 4.134 20 C 0.037 3.963 21 N -0.684 5.684 22 H 0.036 0.964 23 H 0.025 0.975 24 H 0.080 0.920 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 3.278 7.396 8.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.134 3.866 3 H 0.100 0.900 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.169 4.169 7 N -0.538 5.538 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.328 5.328 13 C -0.052 4.052 14 C 0.273 3.727 15 O -0.473 6.473 16 C -0.005 4.005 17 C -0.192 4.192 18 C -0.142 4.142 19 C -0.172 4.172 20 C -0.092 4.092 21 N -0.322 5.322 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.160 3.670 7.482 8.414 hybrid contribution -0.259 -1.617 -0.720 1.789 sum 0.901 2.053 6.762 7.124 Atomic orbital electron populations 1.22056 0.97675 1.00068 1.00512 1.19457 0.91733 0.94765 0.80690 0.89989 1.21425 1.32210 1.13205 0.91207 0.93306 1.25437 0.94985 0.95505 1.01009 1.69935 1.36379 1.23013 1.24514 0.85676 0.78574 0.78464 0.79607 1.20226 1.20711 1.20236 1.48410 1.48631 1.12683 1.23078 1.21482 0.99637 0.82439 1.01672 1.21828 0.78029 0.91397 0.81454 1.90536 1.52428 1.70123 1.34261 1.22035 0.92856 0.86960 0.98693 1.21868 0.97324 1.03363 0.96599 1.22641 0.97965 1.01366 0.92217 1.22752 0.94549 1.01802 0.98102 1.22806 0.97072 1.01761 0.87539 1.62435 1.05755 1.40514 1.23514 0.94523 0.95584 0.90146 0.92416 0.92771 0.90455 0.92516 0.89811 0.92072 0.92344 0.88126 0.90661 0.87671 0.93148 0.88694 0.93398 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 8.48 71.98 0.61 -5.71 16 2 C 0.23 10.75 0.92 44.25 0.04 10.79 16 3 H 0.08 3.92 3.27 -2.38 -0.01 3.91 16 4 C -0.54 -27.40 7.59 25.60 0.19 -27.21 16 5 H 0.05 2.54 7.45 -2.91 -0.02 2.52 16 6 C 0.03 1.62 5.30 84.66 0.45 2.07 16 7 N -0.90 -46.63 11.32 21.45 0.24 -46.39 16 8 Si 0.95 41.02 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.60 -25.78 2.70 -826.79 -2.23 -28.01 16 13 C 0.09 3.53 9.36 127.77 1.20 4.73 16 14 C 0.49 20.66 6.39 87.66 0.56 21.22 16 15 O -0.59 -27.08 15.30 -3.04 -0.05 -27.13 16 16 C 0.09 3.25 0.67 3.25 0.00 3.25 16 17 C -0.13 -4.93 8.53 71.98 0.61 -4.31 16 18 C -0.10 -3.13 5.76 31.98 0.18 -2.94 16 19 C -0.13 -3.61 6.72 31.78 0.21 -3.40 16 20 C 0.04 1.06 7.58 86.65 0.66 1.72 16 21 N -0.68 -24.67 6.19 -465.08 -2.88 -27.55 16 22 H 0.04 1.54 7.66 -2.38 -0.02 1.53 16 23 H 0.03 1.02 6.96 -2.39 -0.02 1.00 16 24 H 0.08 3.87 6.07 -2.39 -0.01 3.85 16 25 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 3.01 7.13 -2.39 -0.02 2.99 16 28 H 0.06 2.20 7.51 -2.39 -0.02 2.18 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.55 5.54 -2.39 -0.01 2.54 16 32 H 0.10 2.56 8.06 -2.39 -0.02 2.54 16 33 H 0.07 2.43 7.21 -2.38 -0.02 2.41 16 34 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.35 13.87 3.57 -89.69 -0.32 13.55 16 Total: -1.00 -56.54 289.39 2.56 -53.98 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.73 Total: 31.85 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.72 Total: 0.20 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -4.87 Total: -101.95 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -56.54 2.56 -53.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.810 kcal (2) G-P(sol) polarization free energy of solvation -56.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds