Wall clock time and date at job start Mon Mar 30 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47496 * 240.00505 * 2 1 3 5 5 H 1.08001 * 119.99760 * 240.00042 * 4 2 1 6 6 C 1.37883 * 120.00027 * 59.99590 * 4 2 1 7 7 N 1.31515 * 119.99779 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47104 * 59.99858 * 8 6 4 10 10 H 1.48497 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47005 * 300.00290 * 8 6 4 12 12 N 1.46496 * 109.47122 * 120.00256 * 2 1 3 13 13 C 1.46497 * 120.00234 * 54.26429 * 12 2 1 14 14 C 1.34783 * 119.99977 * 234.25860 * 12 2 1 15 15 O 1.21283 * 119.99920 * 183.37904 * 14 12 2 16 16 C 1.50695 * 119.99944 * 3.39056 * 14 12 2 17 17 C 1.52995 * 109.88546 * 72.00165 * 16 14 12 18 18 C 1.54319 * 109.88699 * 193.20380 * 16 14 12 19 19 C 1.55142 * 103.02209 * 97.11834 * 18 16 14 20 20 C 1.54913 * 101.64910 * 35.65462 * 19 18 16 21 21 N 1.47447 * 109.88666 * 310.97012 * 16 14 12 22 22 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47644 * 299.99810 * 1 2 3 24 24 H 1.09007 * 109.46890 * 59.99563 * 1 2 3 25 25 H 0.97002 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47440 * 95.08771 * 13 12 2 27 27 H 1.09001 * 109.47050 * 215.09376 * 13 12 2 28 28 H 1.09007 * 109.46904 * 335.08345 * 13 12 2 29 29 H 1.09003 * 109.47143 * 60.69955 * 17 16 14 30 30 H 1.08998 * 109.47750 * 180.70161 * 17 16 14 31 31 H 1.09003 * 109.47071 * 300.70634 * 17 16 14 32 32 H 1.09002 * 110.70647 * 215.50317 * 18 16 14 33 33 H 1.09001 * 110.70515 * 338.73711 * 18 16 14 34 34 H 1.08992 * 110.98854 * 277.56567 * 19 18 16 35 35 H 1.08998 * 110.99278 * 153.74314 * 19 18 16 36 36 H 1.09006 * 110.37144 * 204.10231 * 20 19 18 37 37 H 1.08998 * 110.47095 * 81.81008 * 20 19 18 38 38 H 1.00892 * 111.00114 * 1.87451 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3215 -1.1200 -4.0080 9 1 1.8260 -2.5200 -4.0079 10 1 1.8270 -0.4195 -5.2205 11 1 3.8065 -1.1205 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.5639 -2.0513 1.4932 14 6 2.8857 -0.0742 2.0233 15 8 3.3374 -0.6675 2.9798 16 6 3.2943 1.3521 1.7596 17 6 2.1303 2.2936 2.0753 18 6 4.5183 1.7162 2.6259 19 6 5.7092 1.5072 1.6538 20 6 5.0989 1.9704 0.3074 21 7 3.6958 1.5064 0.3493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1620 -3.4844 26 1 2.2859 -2.7688 1.1033 27 1 1.4733 -2.1767 2.5721 28 1 0.5941 -2.2208 1.0251 29 1 1.8593 2.1965 3.1266 30 1 2.4288 3.3218 1.8706 31 1 1.2736 2.0333 1.4537 32 1 4.4646 2.7550 2.9518 33 1 4.5976 1.0463 3.4821 34 1 5.9984 0.4572 1.6107 35 1 6.5566 2.1329 1.9342 36 1 5.6265 1.5086 -0.5272 37 1 5.1371 3.0566 0.2252 38 1 3.5866 0.6392 -0.1547 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070619360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:38 Heat of formation + Delta-G solvation = -37.117784 kcal Electronic energy + Delta-G solvation = -19057.801345 eV Core-core repulsion = 16320.970539 eV Total energy + Delta-G solvation = -2736.830806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72333 -38.48644 -37.47352 -34.52603 -32.55253 -31.06342 -30.86905 -28.09989 -27.18970 -26.51761 -23.70619 -22.26084 -21.82373 -19.71821 -18.49507 -18.11317 -17.07673 -16.53013 -16.22255 -15.81579 -15.66959 -14.89825 -14.66241 -14.31338 -14.20255 -13.75851 -13.41979 -13.23265 -13.14892 -12.97373 -12.78956 -12.71701 -12.50757 -12.42521 -12.13772 -12.00208 -11.86694 -11.75974 -11.60276 -11.16887 -10.68975 -10.34760 -9.40384 -9.31912 -8.06553 -6.20548 1.44996 1.47465 1.52763 1.66000 2.29986 2.50260 3.19280 3.28795 3.59510 3.79577 3.94613 4.17574 4.42997 4.48928 4.54003 4.61731 4.74506 4.77253 4.82431 4.92271 4.94620 4.96822 5.00199 5.03821 5.11116 5.18768 5.31717 5.34440 5.47567 5.62011 5.82663 6.01265 6.05400 6.27713 6.50720 6.67128 6.91235 7.27068 7.50322 8.95542 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.010202 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.316704 B = 2743.988031 C = 3167.104868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.229 3.771 3 H 0.101 0.899 4 C -0.543 4.543 5 H 0.044 0.956 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.093 3.907 14 C 0.489 3.511 15 O -0.596 6.596 16 C 0.088 3.912 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.144 4.144 20 C 0.039 3.961 21 N -0.679 5.679 22 H 0.032 0.968 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.265 0.735 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 3.103 5.391 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.128 3.872 3 H 0.118 0.882 4 C -0.582 4.582 5 H 0.062 0.938 6 C -0.162 4.162 7 N -0.532 5.532 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.323 5.323 13 C -0.050 4.050 14 C 0.276 3.724 15 O -0.478 6.478 16 C -0.006 4.006 17 C -0.183 4.183 18 C -0.158 4.158 19 C -0.183 4.183 20 C -0.089 4.089 21 N -0.316 5.316 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.889 3.521 5.591 7.667 hybrid contribution 0.451 -1.664 -0.868 1.930 sum 4.341 1.857 4.723 6.678 Atomic orbital electron populations 1.22024 0.98130 0.99572 1.00501 1.19681 0.91759 0.95862 0.79922 0.88166 1.21369 1.32519 1.12922 0.91383 0.93761 1.25346 0.94863 0.95298 1.00689 1.69938 1.36126 1.22863 1.24307 0.85835 0.78648 0.78701 0.79693 1.20401 1.20899 1.20234 1.48397 1.42990 1.15726 1.25195 1.21462 1.00098 0.83179 1.00305 1.21605 0.78672 0.90081 0.82002 1.90536 1.56936 1.68263 1.32072 1.21859 0.98205 0.90182 0.90320 1.21844 0.96253 0.99432 1.00816 1.22783 0.92003 1.03027 0.98025 1.23078 0.98671 1.00950 0.95556 1.23058 0.87405 1.01676 0.96795 1.62292 1.21897 1.38049 1.09372 0.94895 0.95565 0.90574 0.92595 0.94026 0.92031 0.90199 0.91796 0.89834 0.92913 0.88205 0.90759 0.93485 0.87820 0.91870 0.89097 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.42 8.69 71.98 0.63 -5.79 16 2 C 0.23 10.46 0.96 44.24 0.04 10.50 16 3 H 0.10 4.75 3.42 -2.39 -0.01 4.74 16 4 C -0.54 -27.10 7.14 25.60 0.18 -26.92 16 5 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 6 C 0.04 2.02 5.30 84.66 0.45 2.47 16 7 N -0.89 -46.29 11.32 21.45 0.24 -46.04 16 8 Si 0.94 40.83 29.54 68.60 2.03 42.85 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -25.55 2.71 -826.81 -2.24 -27.79 16 13 C 0.09 3.61 9.82 127.77 1.25 4.87 16 14 C 0.49 20.73 6.43 87.65 0.56 21.29 16 15 O -0.60 -27.30 15.08 -3.04 -0.05 -27.35 16 16 C 0.09 3.21 0.77 3.12 0.00 3.21 16 17 C -0.13 -4.15 8.41 71.98 0.61 -3.54 16 18 C -0.12 -3.65 5.92 31.78 0.19 -3.46 16 19 C -0.14 -4.05 7.08 31.98 0.23 -3.82 16 20 C 0.04 1.22 7.57 86.77 0.66 1.87 16 21 N -0.68 -26.14 5.26 -464.87 -2.44 -28.58 16 22 H 0.03 1.40 6.47 -2.39 -0.02 1.39 16 23 H 0.03 1.05 7.83 -2.39 -0.02 1.04 16 24 H 0.08 3.72 6.07 -2.38 -0.01 3.71 16 25 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.28 7.63 -2.39 -0.02 2.26 16 28 H 0.08 2.95 6.14 -2.38 -0.01 2.94 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.96 5.82 -2.39 -0.01 1.94 16 32 H 0.10 2.49 7.86 -2.39 -0.02 2.47 16 33 H 0.07 2.49 6.69 -2.39 -0.02 2.48 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.36 15.84 4.95 -89.70 -0.44 15.40 16 Total: -1.00 -56.03 289.31 2.94 -53.09 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.61 Total: 33.15 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.80 Total: 0.68 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.44 Total: -102.42 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -56.03 2.94 -53.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.968 kcal (2) G-P(sol) polarization free energy of solvation -56.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds