Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47439 * 2 1 4 4 C 1.36936 * 120.00095 * 263.68052 * 3 2 1 5 5 H 1.07999 * 120.00550 * 144.37274 * 4 3 2 6 6 C 1.38813 * 119.99470 * 324.37105 * 4 3 2 7 7 N 1.31627 * 119.99543 * 169.56812 * 6 4 3 8 8 Si 1.86792 * 120.00309 * 349.56687 * 6 4 3 9 9 H 1.48500 * 109.47243 * 94.21087 * 8 6 4 10 10 H 1.48504 * 109.47259 * 214.20679 * 8 6 4 11 11 H 1.48499 * 109.47360 * 334.20667 * 8 6 4 12 12 C 1.46503 * 120.00077 * 83.67025 * 3 2 1 13 13 C 1.50702 * 109.47395 * 285.22249 * 12 3 2 14 14 N 1.34778 * 119.99889 * 324.98490 * 13 12 3 15 15 O 1.21276 * 120.00012 * 144.98312 * 13 12 3 16 16 C 1.53000 * 109.47122 * 165.22039 * 12 3 2 17 17 C 1.52993 * 109.47150 * 300.00397 * 16 12 3 18 18 C 1.53001 * 109.47219 * 299.99814 * 17 16 12 19 19 C 1.53000 * 109.46908 * 60.00038 * 18 17 16 20 20 C 1.52993 * 109.47150 * 300.00004 * 19 18 17 21 21 H 1.09001 * 109.47156 * 299.48155 * 1 2 3 22 22 H 1.09004 * 109.46917 * 59.48706 * 1 2 3 23 23 H 1.09001 * 109.47090 * 179.48342 * 1 2 3 24 24 H 1.08999 * 109.47315 * 239.99871 * 2 1 3 25 25 H 1.09000 * 109.47111 * 119.99828 * 2 1 3 26 26 H 0.97000 * 119.99767 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99767 * 4.59002 * 14 13 12 28 28 H 0.96997 * 120.00176 * 184.58544 * 14 13 12 29 29 H 1.09002 * 109.47183 * 180.02562 * 16 12 3 30 30 H 1.09001 * 109.46950 * 59.99914 * 16 12 3 31 31 H 1.09005 * 109.47339 * 180.02562 * 17 16 12 32 32 H 1.09002 * 109.47221 * 59.99847 * 17 16 12 33 33 H 1.09000 * 109.47493 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47464 * 300.00255 * 18 17 16 35 35 H 1.09002 * 109.47183 * 60.00180 * 19 18 17 36 36 H 1.09001 * 109.47073 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47339 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47673 * 300.00227 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3697 1.9832 -1.1787 5 1 2.1778 3.0358 -1.3257 6 6 2.9726 1.2405 -2.1846 7 7 3.1238 1.7590 -3.3849 8 14 3.5693 -0.4946 -1.8347 9 1 2.5132 -1.4673 -2.2140 10 1 4.7975 -0.7645 -2.6247 11 1 3.8718 -0.6317 -0.3873 12 6 2.1307 2.1185 1.2610 13 6 0.7575 2.5278 1.7277 14 7 -0.1869 2.8665 0.8278 15 8 0.5022 2.5525 2.9130 16 6 2.9898 3.3663 1.0474 17 6 4.3839 2.9507 0.5736 18 6 5.0364 2.0572 1.6304 19 6 4.1773 0.8093 1.8440 20 6 2.7832 1.2249 2.3178 21 1 -0.3633 0.5058 0.8946 22 1 -0.3633 0.5218 -0.8854 23 1 -0.3633 -1.0276 -0.0093 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.5447 1.2398 -4.0879 27 1 -0.0046 2.7831 -0.1213 28 1 -1.0489 3.1935 1.1291 29 1 3.0738 3.9146 1.9857 30 1 2.5250 4.0029 0.2945 31 1 4.9962 3.8398 0.4219 32 1 4.3003 2.4022 -0.3646 33 1 6.0295 1.7607 1.2927 34 1 5.1201 2.6056 2.5686 35 1 4.0937 0.2608 0.9057 36 1 4.6424 0.1725 2.5965 37 1 2.1710 0.3359 2.4695 38 1 2.8668 1.7734 3.2559 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075618333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = -17.501250 kcal Electronic energy + Delta-G solvation = -19646.530424 eV Core-core repulsion = 16910.550255 eV Total energy + Delta-G solvation = -2735.980169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98147 -37.29644 -34.86008 -32.76615 -32.00000 -30.75242 -29.88960 -28.19413 -24.09663 -23.11101 -21.93620 -21.59804 -19.81170 -18.30051 -17.04509 -16.46991 -16.06930 -15.72259 -14.75413 -14.13854 -13.84983 -13.51291 -13.20337 -13.00252 -12.81487 -12.33055 -12.11565 -11.98323 -11.72930 -11.47402 -11.25274 -11.04652 -10.83038 -10.61585 -10.20119 -10.10862 -9.87041 -9.61602 -9.46170 -9.11099 -9.02780 -8.90980 -8.54955 -6.98984 -6.06176 -3.54677 3.23337 3.31445 3.35098 3.42562 4.29530 4.39825 4.74808 5.21023 5.41646 5.43250 5.56624 5.79858 5.87496 5.95174 6.02310 6.14629 6.16363 6.23059 6.25726 6.27779 6.35115 6.42444 6.52917 6.63123 6.64523 6.82211 6.91575 6.93063 6.99713 7.06245 7.39212 7.51399 7.87652 8.08808 8.22219 8.78534 9.00635 9.56640 9.94037 11.07076 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.014225 C = 0.011784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.951373 B = 1967.950255 C = 2375.491792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.593 5.593 4 C -0.263 4.263 5 H 0.089 0.911 6 C 0.034 3.966 7 N -0.905 5.905 8 Si 0.885 3.115 9 H -0.291 1.291 10 H -0.309 1.309 11 H -0.251 1.251 12 C 0.187 3.813 13 C 0.514 3.486 14 N -0.847 5.847 15 O -0.576 6.576 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.108 4.108 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.414 0.586 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -0.591 6.433 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 N -0.318 5.318 4 C -0.391 4.391 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.547 5.547 8 Si 0.720 3.280 9 H -0.220 1.220 10 H -0.238 1.238 11 H -0.177 1.177 12 C 0.096 3.904 13 C 0.298 3.702 14 N -0.410 5.410 15 O -0.455 6.455 16 C -0.126 4.126 17 C -0.161 4.161 18 C -0.149 4.149 19 C -0.166 4.166 20 C -0.147 4.147 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.213 0.787 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.805 -0.634 7.013 7.088 hybrid contribution -0.116 -0.940 -0.344 1.007 sum -0.921 -1.573 6.669 6.914 Atomic orbital electron populations 1.22386 0.98982 0.99871 1.01832 1.21239 0.92584 0.86904 0.99098 1.44259 1.74883 1.10765 1.01866 1.18692 1.34402 0.96532 0.89469 0.89354 1.25385 0.97210 0.98091 0.95931 1.69739 1.45578 1.37657 1.01687 0.86980 0.76950 0.85402 0.78685 1.22020 1.23802 1.17677 1.19898 0.89090 0.93736 0.87692 1.21997 0.88440 0.74411 0.85388 1.44029 1.16591 1.68477 1.11879 1.90615 1.82352 1.55030 1.17526 1.21374 0.96302 0.95049 0.99863 1.21727 0.93689 0.99049 1.01675 1.21462 0.98092 0.96703 0.98685 1.21801 0.94651 0.97818 1.02311 1.21631 0.96168 0.99222 0.97679 0.93136 0.92243 0.94211 0.93092 0.93615 0.92602 0.75401 0.78699 0.93266 0.91203 0.93660 0.86907 0.93112 0.93526 0.89427 0.93600 0.92537 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.10 37.16 0.34 -2.71 16 2 C 0.13 2.52 3.93 -4.04 -0.02 2.50 16 3 N -0.59 -12.06 0.72 -159.65 -0.11 -12.17 16 4 C -0.26 -6.12 6.11 -15.06 -0.09 -6.21 16 5 H 0.09 2.22 6.75 -52.49 -0.35 1.86 16 6 C 0.03 0.87 4.98 -17.43 -0.09 0.78 16 7 N -0.91 -25.07 13.97 55.49 0.78 -24.29 16 8 Si 0.89 20.42 24.20 -169.99 -4.11 16.30 16 9 H -0.29 -6.78 6.86 56.52 0.39 -6.40 16 10 H -0.31 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.25 -5.38 3.84 56.52 0.22 -5.17 16 12 C 0.19 3.58 0.62 -132.97 -0.08 3.50 16 13 C 0.51 9.84 5.40 -10.98 -0.06 9.78 16 14 N -0.85 -13.86 7.36 31.22 0.23 -13.63 16 15 O -0.58 -12.48 16.93 5.56 0.09 -12.38 16 16 C -0.09 -1.63 4.22 -26.73 -0.11 -1.74 16 17 C -0.12 -2.31 5.60 -26.73 -0.15 -2.46 16 18 C -0.11 -1.89 5.92 -26.73 -0.16 -2.05 16 19 C -0.13 -2.29 5.65 -26.73 -0.15 -2.44 16 20 C -0.11 -1.99 3.74 -26.73 -0.10 -2.09 16 21 H 0.05 0.89 5.86 -51.93 -0.30 0.59 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.11 2.41 -51.93 -0.12 0.99 16 25 H 0.05 0.88 5.75 -51.93 -0.30 0.58 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.41 6.99 7.37 -40.82 -0.30 6.69 16 28 H 0.38 5.42 8.93 -40.82 -0.36 5.05 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.34 6.77 -51.93 -0.35 0.99 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 2.47 5.10 -51.93 -0.26 2.21 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.75 3.79 -51.93 -0.20 1.55 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.05 6.54 -51.93 -0.34 0.71 16 38 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -27.17 268.71 -5.35 -32.53 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.60 Total: 12.75 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.67 Total: -3.14 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.89 Total: -50.10 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.11 Total: 16.30 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.17 -5.35 -32.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075618333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.024 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds