Wall clock time and date at job start Mon Mar 30 2020 03:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00419 * 2 1 4 4 O 1.21278 * 119.99592 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00451 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47309 * 59.99182 * 5 3 2 7 7 C 1.53001 * 109.46762 * 299.99325 * 5 3 2 8 8 N 1.46500 * 109.47394 * 179.97438 * 5 3 2 9 9 C 1.36938 * 120.00253 * 235.31437 * 8 5 3 10 10 H 1.08001 * 119.99866 * 240.87432 * 9 8 5 11 11 C 1.38813 * 119.99688 * 60.87618 * 9 8 5 12 12 N 1.31621 * 119.99465 * 168.65051 * 11 9 8 13 13 Si 1.86794 * 120.00023 * 348.64609 * 11 9 8 14 14 H 1.48508 * 109.47066 * 84.00275 * 13 11 9 15 15 H 1.48502 * 109.46871 * 203.99961 * 13 11 9 16 16 H 1.48492 * 109.47478 * 324.00330 * 13 11 9 17 17 C 1.46504 * 119.99638 * 55.31798 * 8 5 3 18 18 C 1.54895 * 110.48445 * 229.96409 * 17 8 5 19 19 C 1.54890 * 102.74689 * 203.38044 * 18 17 8 20 20 C 1.54261 * 104.19763 * 37.93974 * 19 18 17 21 21 C 1.53876 * 106.59908 * 336.39033 * 20 19 18 22 22 H 1.09005 * 109.46861 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47421 * 300.00745 * 1 2 3 24 24 H 1.09001 * 109.46639 * 60.00549 * 1 2 3 25 25 H 0.97001 * 120.00118 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47398 * 60.00149 * 7 5 3 27 27 H 1.09004 * 109.47105 * 179.97438 * 7 5 3 28 28 H 1.08991 * 109.47409 * 299.99722 * 7 5 3 29 29 H 0.96996 * 119.99764 * 180.02562 * 12 11 9 30 30 H 1.09003 * 110.53757 * 352.57174 * 17 8 5 31 31 H 1.09003 * 110.75270 * 85.06078 * 18 17 8 32 32 H 1.09006 * 110.75401 * 321.69536 * 18 17 8 33 33 H 1.08997 * 110.48318 * 279.26090 * 19 18 17 34 34 H 1.08997 * 110.48443 * 156.62111 * 19 18 17 35 35 H 1.09004 * 110.03080 * 95.67500 * 20 19 18 36 36 H 1.08999 * 110.03025 * 217.05457 * 20 19 18 37 37 H 1.09003 * 110.02988 * 119.28842 * 21 20 19 38 38 H 1.08999 * 110.03124 * 240.66172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6534 -0.8908 7 6 4.1563 0.4458 1.2484 8 7 4.1343 2.5483 -0.0011 9 6 4.9984 2.9687 -0.9766 10 1 5.9821 3.3255 -0.7095 11 6 4.6099 2.9362 -2.3089 12 7 5.3401 3.5406 -3.2221 13 14 3.0511 2.0348 -2.8055 14 1 1.8800 2.9272 -2.6117 15 1 3.1415 1.6400 -4.2343 16 1 2.8925 0.8206 -1.9655 17 6 3.6982 3.4798 1.0422 18 6 3.1949 4.8024 0.4123 19 6 3.3662 5.8186 1.5687 20 6 4.6829 5.3956 2.2522 21 6 4.8939 3.9086 1.9175 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 1.9500 -0.8400 0.0004 26 1 3.7930 -0.5819 1.2485 27 1 5.2463 0.4453 1.2478 28 1 3.7933 0.9595 2.1385 29 1 5.0685 3.5183 -4.1530 30 1 2.9184 3.0287 1.6560 31 1 2.1472 4.7185 0.1236 32 1 3.8111 5.0821 -0.4423 33 1 2.5329 5.7452 2.2674 34 1 3.4484 6.8322 1.1766 35 1 5.5120 5.9871 1.8637 36 1 4.6029 5.5286 3.3310 37 1 5.8255 3.7784 1.3667 38 1 4.9171 3.3192 2.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:38 Heat of formation + Delta-G solvation = -9.908793 kcal Electronic energy + Delta-G solvation = -18983.738245 eV Core-core repulsion = 16248.087309 eV Total energy + Delta-G solvation = -2735.650936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46383 -37.33435 -34.54117 -34.06535 -31.95510 -29.86517 -27.71368 -26.70091 -26.47695 -23.87704 -22.25944 -19.84720 -19.51177 -19.05887 -16.85219 -16.40701 -15.61364 -15.35444 -14.98072 -14.41999 -13.97959 -13.32136 -13.28575 -12.96761 -12.70032 -12.42478 -12.11357 -11.92131 -11.66021 -11.41948 -11.29545 -10.87358 -10.66818 -10.36048 -10.26122 -10.11090 -9.90647 -9.69304 -9.45417 -9.33314 -8.93158 -8.65954 -8.35953 -6.40652 -5.92749 -3.72019 3.15708 3.45055 3.46211 3.60095 3.75029 4.55091 4.99649 5.24912 5.28469 5.53254 5.57247 5.59405 5.67866 5.73079 5.91499 5.94641 6.00128 6.15519 6.27938 6.39395 6.44158 6.52538 6.57601 6.69120 6.71197 6.72877 6.79009 6.83251 6.99788 7.17004 7.41134 7.57145 7.92920 8.18230 8.64500 8.82762 9.11167 9.69121 10.23991 11.12756 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.013315 C = 0.009962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.599054 B = 2102.427203 C = 2809.977329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.749 5.749 3 C 0.496 3.504 4 O -0.525 6.525 5 C 0.132 3.868 6 H 0.105 0.895 7 C -0.154 4.154 8 N -0.576 5.576 9 C -0.276 4.276 10 H 0.076 0.924 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.882 3.118 14 H -0.275 1.275 15 H -0.310 1.310 16 H -0.259 1.259 17 C 0.189 3.811 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.137 4.137 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.396 0.604 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -6.463 8.649 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.403 5.403 3 C 0.282 3.718 4 O -0.400 6.400 5 C 0.021 3.979 6 H 0.123 0.877 7 C -0.213 4.213 8 N -0.296 5.296 9 C -0.405 4.405 10 H 0.093 0.907 11 C -0.148 4.148 12 N -0.536 5.536 13 Si 0.713 3.287 14 H -0.201 1.201 15 H -0.238 1.238 16 H -0.185 1.185 17 C 0.083 3.917 18 C -0.161 4.161 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.177 4.177 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.229 0.771 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.968 -5.602 8.441 11.758 hybrid contribution -0.748 -0.914 -0.512 1.287 sum -6.716 -6.515 7.928 12.264 Atomic orbital electron populations 1.21390 0.81175 1.01148 1.01722 1.46093 1.06891 1.09276 1.78048 1.22201 0.92393 0.83127 0.74073 1.90641 1.70368 1.31090 1.47869 1.21226 0.87465 0.90283 0.98896 0.87696 1.22259 1.02368 0.98212 0.98498 1.43815 1.51915 1.03246 1.30657 1.18466 0.95658 1.41592 0.84752 0.90704 1.25904 0.96211 0.95480 0.97239 1.69863 1.40182 1.41892 1.01702 0.87219 0.84988 0.81163 0.75343 1.20055 1.23821 1.18511 1.21088 0.91972 0.89794 0.88830 1.22721 1.00937 0.94705 0.97782 1.22299 0.96739 0.98956 0.98275 1.22021 0.97726 0.97310 0.98436 1.22619 1.02082 0.94240 0.98754 0.91473 0.92803 0.93003 0.77069 0.93788 0.91429 0.93183 0.92739 0.92966 0.92660 0.89816 0.93082 0.92895 0.92582 0.93521 0.90895 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.70 59.85 0.64 1.84 16 2 N -0.75 -11.71 5.57 -67.08 -0.37 -12.08 16 3 C 0.50 10.02 3.88 -10.99 -0.04 9.98 16 4 O -0.52 -12.45 12.83 5.56 0.07 -12.38 16 5 C 0.13 2.70 1.97 -69.09 -0.14 2.56 16 6 H 0.11 2.24 5.23 -51.93 -0.27 1.97 16 7 C -0.15 -2.51 9.16 37.16 0.34 -2.17 16 8 N -0.58 -13.50 1.68 -157.58 -0.27 -13.76 16 9 C -0.28 -7.48 7.82 -15.06 -0.12 -7.60 16 10 H 0.08 2.22 7.38 -52.49 -0.39 1.83 16 11 C 0.05 1.56 5.50 -17.43 -0.10 1.47 16 12 N -0.90 -27.16 13.97 55.49 0.78 -26.39 16 13 Si 0.88 22.64 24.30 -169.99 -4.13 18.51 16 14 H -0.27 -7.72 7.11 56.52 0.40 -7.32 16 15 H -0.31 -8.11 7.11 56.52 0.40 -7.70 16 16 H -0.26 -5.85 3.55 56.52 0.20 -5.65 16 17 C 0.19 4.12 1.68 -66.27 -0.11 4.01 16 18 C -0.12 -2.76 6.21 -24.73 -0.15 -2.91 16 19 C -0.12 -2.28 6.83 -25.07 -0.17 -2.45 16 20 C -0.12 -2.04 6.80 -25.61 -0.17 -2.22 16 21 C -0.14 -2.67 6.43 -25.61 -0.16 -2.84 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.40 4.95 8.25 -40.82 -0.34 4.61 16 26 H 0.04 0.57 7.56 -51.93 -0.39 0.18 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 30 H 0.05 1.14 6.54 -51.93 -0.34 0.80 16 31 H 0.05 1.31 7.63 -51.93 -0.40 0.92 16 32 H 0.08 2.15 7.00 -51.93 -0.36 1.79 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.56 6.89 -51.93 -0.36 1.20 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -31.96 288.72 -6.14 -38.10 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.38 Total: 3.97 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.19 Total: -0.32 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.14 Total: -52.23 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.51 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.96 -6.14 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.188 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds