Wall clock time and date at job start Mon Mar 30 2020 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00419 * 2 1 4 4 O 1.21278 * 119.99592 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00451 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47309 * 59.99182 * 5 3 2 7 7 C 1.53001 * 109.46762 * 299.99325 * 5 3 2 8 8 N 1.46500 * 109.47394 * 179.97438 * 5 3 2 9 9 C 1.36938 * 120.00253 * 235.31437 * 8 5 3 10 10 H 1.08001 * 119.99866 * 240.87432 * 9 8 5 11 11 C 1.38813 * 119.99688 * 60.87618 * 9 8 5 12 12 N 1.31621 * 119.99465 * 168.65051 * 11 9 8 13 13 Si 1.86794 * 120.00023 * 348.64609 * 11 9 8 14 14 H 1.48508 * 109.47066 * 84.00275 * 13 11 9 15 15 H 1.48502 * 109.46871 * 203.99961 * 13 11 9 16 16 H 1.48492 * 109.47478 * 324.00330 * 13 11 9 17 17 C 1.46504 * 119.99638 * 55.31798 * 8 5 3 18 18 C 1.54895 * 110.48445 * 229.96409 * 17 8 5 19 19 C 1.54890 * 102.74689 * 203.38044 * 18 17 8 20 20 C 1.54261 * 104.19763 * 37.93974 * 19 18 17 21 21 C 1.53876 * 106.59908 * 336.39033 * 20 19 18 22 22 H 1.09005 * 109.46861 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47421 * 300.00745 * 1 2 3 24 24 H 1.09001 * 109.46639 * 60.00549 * 1 2 3 25 25 H 0.97001 * 120.00118 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47398 * 60.00149 * 7 5 3 27 27 H 1.09004 * 109.47105 * 179.97438 * 7 5 3 28 28 H 1.08991 * 109.47409 * 299.99722 * 7 5 3 29 29 H 0.96996 * 119.99764 * 180.02562 * 12 11 9 30 30 H 1.09003 * 110.53757 * 352.57174 * 17 8 5 31 31 H 1.09003 * 110.75270 * 85.06078 * 18 17 8 32 32 H 1.09006 * 110.75401 * 321.69536 * 18 17 8 33 33 H 1.08997 * 110.48318 * 279.26090 * 19 18 17 34 34 H 1.08997 * 110.48443 * 156.62111 * 19 18 17 35 35 H 1.09004 * 110.03080 * 95.67500 * 20 19 18 36 36 H 1.08999 * 110.03025 * 217.05457 * 20 19 18 37 37 H 1.09003 * 110.02988 * 119.28842 * 21 20 19 38 38 H 1.08999 * 110.03124 * 240.66172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6534 -0.8908 7 6 4.1563 0.4458 1.2484 8 7 4.1343 2.5483 -0.0011 9 6 4.9984 2.9687 -0.9766 10 1 5.9821 3.3255 -0.7095 11 6 4.6099 2.9362 -2.3089 12 7 5.3401 3.5406 -3.2221 13 14 3.0511 2.0348 -2.8055 14 1 1.8800 2.9272 -2.6117 15 1 3.1415 1.6400 -4.2343 16 1 2.8925 0.8206 -1.9655 17 6 3.6982 3.4798 1.0422 18 6 3.1949 4.8024 0.4123 19 6 3.3662 5.8186 1.5687 20 6 4.6829 5.3956 2.2522 21 6 4.8939 3.9086 1.9175 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 1.9500 -0.8400 0.0004 26 1 3.7930 -0.5819 1.2485 27 1 5.2463 0.4453 1.2478 28 1 3.7933 0.9595 2.1385 29 1 5.0685 3.5183 -4.1530 30 1 2.9184 3.0287 1.6560 31 1 2.1472 4.7185 0.1236 32 1 3.8111 5.0821 -0.4423 33 1 2.5329 5.7452 2.2674 34 1 3.4484 6.8322 1.1766 35 1 5.5120 5.9871 1.8637 36 1 4.6029 5.5286 3.3310 37 1 5.8255 3.7784 1.3667 38 1 4.9171 3.3192 2.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:37 Heat of formation + Delta-G solvation = -33.206672 kcal Electronic energy + Delta-G solvation = -18984.748517 eV Core-core repulsion = 16248.087309 eV Total energy + Delta-G solvation = -2736.661207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05934 -38.98180 -36.24367 -35.51487 -34.00814 -31.52313 -29.34488 -28.46394 -27.70831 -25.63890 -23.94325 -21.39373 -21.05005 -20.88117 -18.65141 -18.05882 -17.41667 -16.97486 -16.53477 -16.05050 -15.63388 -15.01676 -14.90652 -14.67042 -14.22970 -14.05123 -13.63205 -13.26134 -13.14172 -13.06193 -13.04413 -12.75330 -12.29284 -12.09562 -11.87709 -11.86457 -11.73999 -11.37579 -11.23879 -11.06045 -10.63832 -10.50144 -10.01092 -8.42401 -8.04958 -5.91420 1.13591 1.35352 1.44782 1.80976 2.39732 2.41106 3.06881 3.31194 3.98747 4.01849 4.05773 4.23115 4.42122 4.45494 4.51675 4.61724 4.69275 4.78260 4.88585 4.91901 4.94126 4.97153 4.98271 5.08748 5.21168 5.22858 5.30990 5.41844 5.53535 5.62652 5.65870 5.72579 6.00119 6.38527 6.62163 7.13707 7.39996 7.61172 8.16525 8.93849 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.013315 C = 0.009962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.599054 B = 2102.427203 C = 2809.977329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.489 3.511 4 O -0.566 6.566 5 C 0.122 3.878 6 H 0.096 0.904 7 C -0.142 4.142 8 N -0.589 5.589 9 C -0.248 4.248 10 H 0.041 0.959 11 C 0.005 3.995 12 N -0.943 5.943 13 Si 0.929 3.071 14 H -0.311 1.311 15 H -0.316 1.316 16 H -0.211 1.211 17 C 0.188 3.812 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.131 4.131 22 H 0.116 0.884 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.415 0.585 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -8.638 11.199 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.275 3.725 4 O -0.444 6.444 5 C 0.012 3.988 6 H 0.113 0.887 7 C -0.201 4.201 8 N -0.310 5.310 9 C -0.378 4.378 10 H 0.059 0.941 11 C -0.194 4.194 12 N -0.585 5.585 13 Si 0.760 3.240 14 H -0.239 1.239 15 H -0.245 1.245 16 H -0.135 1.135 17 C 0.083 3.917 18 C -0.163 4.163 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.171 4.171 22 H 0.134 0.866 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.252 0.748 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.114 -7.869 11.031 15.304 hybrid contribution -0.422 -0.236 -1.239 1.330 sum -7.536 -8.104 9.792 14.777 Atomic orbital electron populations 1.21602 0.79282 1.04062 1.00752 1.45933 1.08168 1.08654 1.75881 1.22081 0.92259 0.83864 0.74262 1.90642 1.70943 1.32843 1.49994 1.21342 0.88131 0.88559 1.00781 0.88682 1.22120 1.02126 0.99943 0.95899 1.43876 1.51612 1.05245 1.30279 1.18224 0.94675 1.39545 0.85379 0.94148 1.26473 0.98596 0.96766 0.97548 1.69974 1.42264 1.44387 1.01896 0.86503 0.80468 0.81666 0.75334 1.23946 1.24506 1.13476 1.21175 0.93024 0.88952 0.88589 1.22616 0.98530 0.97204 0.97997 1.22263 0.98162 0.98058 0.96911 1.22014 0.96907 0.95583 1.00509 1.22520 0.99438 0.96191 0.98915 0.86593 0.92985 0.94849 0.74833 0.89604 0.91724 0.92919 0.93068 0.92351 0.94848 0.94281 0.90888 0.92030 0.92900 0.89964 0.93623 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.99 10.70 127.77 1.37 3.36 16 2 N -0.73 -20.04 5.57 -484.54 -2.70 -22.74 16 3 C 0.49 18.67 3.88 87.65 0.34 19.01 16 4 O -0.57 -26.39 12.83 -3.02 -0.04 -26.43 16 5 C 0.12 4.74 1.97 44.24 0.09 4.83 16 6 H 0.10 3.86 5.23 -2.39 -0.01 3.85 16 7 C -0.14 -4.12 9.16 71.98 0.66 -3.46 16 8 N -0.59 -27.61 1.68 -652.46 -1.10 -28.71 16 9 C -0.25 -13.91 7.82 84.03 0.66 -13.25 16 10 H 0.04 2.54 7.38 -2.91 -0.02 2.52 16 11 C 0.00 0.28 5.50 84.86 0.47 0.74 16 12 N -0.94 -59.73 13.97 21.65 0.30 -59.43 16 13 Si 0.93 47.98 24.30 68.60 1.67 49.65 16 14 H -0.31 -17.99 7.11 99.48 0.71 -17.29 16 15 H -0.32 -16.49 7.11 99.48 0.71 -15.78 16 16 H -0.21 -9.07 3.55 99.48 0.35 -8.72 16 17 C 0.19 8.11 1.68 46.07 0.08 8.18 16 18 C -0.12 -5.72 6.21 31.89 0.20 -5.52 16 19 C -0.12 -4.09 6.83 31.67 0.22 -3.87 16 20 C -0.11 -3.67 6.80 31.32 0.21 -3.46 16 21 C -0.13 -4.92 6.43 31.32 0.20 -4.72 16 22 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.42 8.22 8.25 -92.71 -0.76 7.45 16 26 H 0.09 1.78 7.56 -2.39 -0.02 1.76 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.52 7.56 -2.39 -0.02 1.50 16 29 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.06 2.46 6.54 -2.39 -0.02 2.45 16 31 H 0.03 1.63 7.63 -2.39 -0.02 1.61 16 32 H 0.04 2.11 7.00 -2.38 -0.02 2.09 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.95 6.89 -2.39 -0.02 1.93 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -74.04 288.72 2.54 -71.50 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.08 Total: 14.31 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 4.48 Total: 1.85 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.49 Total: -110.87 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.65 kcal Total: -74.04 2.54 -71.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.291 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds