Wall clock time and date at job start Mon Mar 30 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 119.99949 * 2 1 4 4 O 1.21274 * 119.99886 * 5.03044 * 3 2 1 5 5 C 1.50703 * 119.99745 * 184.75731 * 3 2 1 6 6 H 1.09000 * 109.46646 * 300.88206 * 5 3 2 7 7 C 1.52993 * 109.47394 * 60.88626 * 5 3 2 8 8 N 1.46497 * 109.46576 * 180.88622 * 5 3 2 9 9 C 1.36935 * 120.00239 * 297.17860 * 8 5 3 10 10 H 1.07991 * 120.00211 * 112.07128 * 9 8 5 11 11 C 1.38817 * 119.99672 * 292.06585 * 9 8 5 12 12 N 1.31624 * 119.99374 * 161.16542 * 11 9 8 13 13 Si 1.86791 * 120.00335 * 341.17170 * 11 9 8 14 14 H 1.48500 * 109.47192 * 96.69954 * 13 11 9 15 15 H 1.48496 * 109.47384 * 216.69867 * 13 11 9 16 16 H 1.48501 * 109.47279 * 336.69966 * 13 11 9 17 17 C 1.46504 * 119.99693 * 117.18542 * 8 5 3 18 18 C 1.54271 * 110.03044 * 237.15892 * 17 8 5 19 19 C 1.54887 * 104.19785 * 217.10667 * 18 17 8 20 20 C 1.54886 * 102.74864 * 37.94133 * 19 18 17 21 21 C 1.53877 * 110.03532 * 119.99683 * 17 8 5 22 22 H 1.08996 * 109.47525 * 64.93907 * 1 2 3 23 23 H 1.09007 * 109.47046 * 184.93526 * 1 2 3 24 24 H 1.08997 * 109.47301 * 304.93690 * 1 2 3 25 25 H 0.97000 * 119.99954 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47134 * 315.13058 * 7 5 3 27 27 H 1.08997 * 109.47457 * 75.13326 * 7 5 3 28 28 H 1.09001 * 109.47129 * 195.13520 * 7 5 3 29 29 H 0.97000 * 119.99732 * 180.02562 * 12 11 9 30 30 H 1.08998 * 110.01964 * 358.59675 * 17 8 5 31 31 H 1.09002 * 110.48899 * 335.78795 * 18 17 8 32 32 H 1.09003 * 110.48498 * 98.42776 * 18 17 8 33 33 H 1.09005 * 110.75223 * 279.62406 * 19 18 17 34 34 H 1.08999 * 110.91420 * 156.33417 * 19 18 17 35 35 H 1.08998 * 110.48203 * 203.37562 * 20 19 18 36 36 H 1.09002 * 110.59476 * 80.79307 * 20 19 18 37 37 H 1.08998 * 110.03344 * 238.56761 * 21 17 8 38 38 H 1.09004 * 110.03049 * 359.94844 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2154 0.0921 5 6 3.6420 1.1694 -0.1082 6 1 4.0668 0.6063 0.7227 7 6 4.0591 0.5212 -1.4298 8 7 4.1326 2.5491 -0.0648 9 6 3.7772 3.4335 -1.0480 10 1 3.1297 4.2663 -0.8169 11 6 4.2495 3.2595 -2.3417 12 7 3.6441 3.8531 -3.3485 13 14 5.7437 2.1830 -2.6537 14 1 5.2996 0.8226 -3.0503 15 1 6.5609 2.7742 -3.7436 16 1 6.5587 2.0963 -1.4153 17 6 5.0035 2.9826 1.0306 18 6 4.3740 4.1867 1.7613 19 6 5.5824 5.0853 2.1237 20 6 6.4974 4.9448 0.8819 21 6 6.3536 3.4647 0.4715 22 1 -0.3634 0.4353 -0.9309 23 1 -0.3633 -1.0239 0.0884 24 1 -0.3634 0.5885 0.8424 25 1 1.9500 -0.8400 -0.0004 26 1 3.4822 -0.3905 -1.5854 27 1 3.8713 1.2144 -2.2497 28 1 5.1211 0.2778 -1.3958 29 1 3.9739 3.7313 -4.2526 30 1 5.1607 2.1613 1.7298 31 1 3.6882 4.7177 1.1011 32 1 3.8586 3.8583 2.6639 33 1 6.0847 4.7152 3.0175 34 1 5.2706 6.1210 2.2586 35 1 7.5315 5.1697 1.1427 36 1 6.1567 5.5982 0.0787 37 1 7.1661 2.8778 0.8998 38 1 6.3612 3.3752 -0.6148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:41 Heat of formation + Delta-G solvation = 8.574128 kcal Electronic energy + Delta-G solvation = -18894.270495 eV Core-core repulsion = 16159.421039 eV Total energy + Delta-G solvation = -2734.849456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06370 -37.53071 -34.66259 -33.79768 -31.67411 -30.05886 -27.88248 -26.64225 -26.23249 -24.52922 -21.82965 -19.99896 -19.46853 -18.88603 -17.30308 -16.12589 -15.75358 -14.86868 -14.80777 -14.45773 -14.03220 -13.47262 -13.31501 -13.20842 -12.48451 -12.35914 -12.08625 -11.88782 -11.64355 -11.40322 -11.29653 -10.91503 -10.57973 -10.31151 -10.30431 -10.17074 -9.79215 -9.62912 -9.05333 -8.98121 -8.79714 -8.45492 -8.29989 -6.28087 -5.84791 -3.69070 3.28965 3.48994 3.54161 3.62490 3.90958 4.50617 4.96715 5.25457 5.40961 5.48484 5.50756 5.69862 5.75570 5.83664 5.88869 6.09853 6.13255 6.14255 6.26666 6.30128 6.35653 6.44376 6.51169 6.55389 6.64970 6.68682 6.87246 6.99507 7.04063 7.08099 7.29839 7.32532 8.11755 8.22310 8.87825 9.03950 9.26136 9.71097 10.27105 11.18085 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.012146 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.830522 B = 2304.787736 C = 3022.510612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.756 5.756 3 C 0.495 3.505 4 O -0.502 6.502 5 C 0.154 3.846 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.578 5.578 9 C -0.250 4.250 10 H 0.067 0.933 11 C 0.048 3.952 12 N -0.892 5.892 13 Si 0.869 3.131 14 H -0.281 1.281 15 H -0.316 1.316 16 H -0.242 1.242 17 C 0.175 3.825 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.147 4.147 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.392 0.608 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.262 0.738 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -7.905 7.875 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.412 5.412 3 C 0.280 3.720 4 O -0.373 6.373 5 C 0.044 3.956 6 H 0.090 0.910 7 C -0.242 4.242 8 N -0.298 5.298 9 C -0.380 4.380 10 H 0.085 0.915 11 C -0.154 4.154 12 N -0.531 5.531 13 Si 0.700 3.300 14 H -0.208 1.208 15 H -0.245 1.245 16 H -0.167 1.167 17 C 0.069 3.931 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.186 4.186 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.224 0.776 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.445 -7.029 7.752 10.564 hybrid contribution 0.846 -1.067 -0.448 1.433 sum 2.291 -8.096 7.304 11.142 Atomic orbital electron populations 1.21346 0.81448 1.00737 1.01731 1.46173 1.06728 1.09145 1.79121 1.22148 0.91716 0.82926 0.75207 1.90645 1.69891 1.31228 1.45544 1.20589 0.88818 0.89544 0.96672 0.90981 1.23056 1.00244 1.00807 1.00111 1.43891 1.53437 1.06355 1.26165 1.18323 1.25532 1.07556 0.86555 0.91518 1.26259 0.96806 0.95944 0.96355 1.69920 1.39192 1.44999 0.98990 0.88023 0.84469 0.79730 0.77767 1.20790 1.24549 1.16698 1.21167 0.89120 0.94204 0.88640 1.22732 0.97353 0.97629 0.99123 1.22415 0.97232 0.99125 0.97199 1.22243 0.97627 0.97874 0.97682 1.22984 0.97041 0.94774 1.03784 0.93119 0.91898 0.92816 0.77599 0.93115 0.88804 0.92602 0.92840 0.93583 0.89785 0.93720 0.92916 0.92747 0.93503 0.91487 0.94017 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.73 59.85 0.64 1.95 16 2 N -0.76 -12.15 5.42 -67.08 -0.36 -12.51 16 3 C 0.50 10.52 7.04 -10.98 -0.08 10.44 16 4 O -0.50 -13.09 15.36 5.56 0.09 -13.00 16 5 C 0.15 3.17 3.18 -69.09 -0.22 2.95 16 6 H 0.07 1.25 7.57 -51.93 -0.39 0.85 16 7 C -0.18 -3.73 6.48 37.15 0.24 -3.49 16 8 N -0.58 -13.49 1.39 -158.19 -0.22 -13.71 16 9 C -0.25 -6.93 6.67 -15.06 -0.10 -7.03 16 10 H 0.07 2.16 7.25 -52.49 -0.38 1.78 16 11 C 0.05 1.35 4.38 -17.43 -0.08 1.28 16 12 N -0.89 -27.24 13.97 55.49 0.78 -26.47 16 13 Si 0.87 21.00 21.26 -169.99 -3.61 17.39 16 14 H -0.28 -6.43 5.23 56.52 0.30 -6.14 16 15 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 16 H -0.24 -5.44 4.82 56.52 0.27 -5.16 16 17 C 0.17 3.58 3.44 -66.81 -0.23 3.35 16 18 C -0.13 -2.56 6.41 -25.07 -0.16 -2.72 16 19 C -0.12 -2.05 6.91 -24.74 -0.17 -2.23 16 20 C -0.12 -2.11 6.83 -25.07 -0.17 -2.28 16 21 C -0.15 -2.93 5.59 -25.61 -0.14 -3.08 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 25 H 0.39 4.90 8.39 -40.82 -0.34 4.55 16 26 H 0.05 0.85 7.38 -51.93 -0.38 0.47 16 27 H 0.09 2.29 3.42 -51.93 -0.18 2.11 16 28 H 0.06 1.08 5.69 -51.93 -0.30 0.78 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.05 0.85 7.59 -51.93 -0.39 0.46 16 31 H 0.08 1.96 6.53 -51.93 -0.34 1.62 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.05 3.02 -51.93 -0.16 1.90 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -32.82 280.60 -5.61 -38.43 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.04 Total: 6.49 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.47 Total: -0.85 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.19 Total: -52.69 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -3.61 Total: 17.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.82 -5.61 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds