Wall clock time and date at job start Mon Mar 30 2020 03:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 119.99949 * 2 1 4 4 O 1.21274 * 119.99886 * 5.03044 * 3 2 1 5 5 C 1.50703 * 119.99745 * 184.75731 * 3 2 1 6 6 H 1.09000 * 109.46646 * 300.88206 * 5 3 2 7 7 C 1.52993 * 109.47394 * 60.88626 * 5 3 2 8 8 N 1.46497 * 109.46576 * 180.88622 * 5 3 2 9 9 C 1.36935 * 120.00239 * 297.17860 * 8 5 3 10 10 H 1.07991 * 120.00211 * 112.07128 * 9 8 5 11 11 C 1.38817 * 119.99672 * 292.06585 * 9 8 5 12 12 N 1.31624 * 119.99374 * 161.16542 * 11 9 8 13 13 Si 1.86791 * 120.00335 * 341.17170 * 11 9 8 14 14 H 1.48500 * 109.47192 * 96.69954 * 13 11 9 15 15 H 1.48496 * 109.47384 * 216.69867 * 13 11 9 16 16 H 1.48501 * 109.47279 * 336.69966 * 13 11 9 17 17 C 1.46504 * 119.99693 * 117.18542 * 8 5 3 18 18 C 1.54271 * 110.03044 * 237.15892 * 17 8 5 19 19 C 1.54887 * 104.19785 * 217.10667 * 18 17 8 20 20 C 1.54886 * 102.74864 * 37.94133 * 19 18 17 21 21 C 1.53877 * 110.03532 * 119.99683 * 17 8 5 22 22 H 1.08996 * 109.47525 * 64.93907 * 1 2 3 23 23 H 1.09007 * 109.47046 * 184.93526 * 1 2 3 24 24 H 1.08997 * 109.47301 * 304.93690 * 1 2 3 25 25 H 0.97000 * 119.99954 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47134 * 315.13058 * 7 5 3 27 27 H 1.08997 * 109.47457 * 75.13326 * 7 5 3 28 28 H 1.09001 * 109.47129 * 195.13520 * 7 5 3 29 29 H 0.97000 * 119.99732 * 180.02562 * 12 11 9 30 30 H 1.08998 * 110.01964 * 358.59675 * 17 8 5 31 31 H 1.09002 * 110.48899 * 335.78795 * 18 17 8 32 32 H 1.09003 * 110.48498 * 98.42776 * 18 17 8 33 33 H 1.09005 * 110.75223 * 279.62406 * 19 18 17 34 34 H 1.08999 * 110.91420 * 156.33417 * 19 18 17 35 35 H 1.08998 * 110.48203 * 203.37562 * 20 19 18 36 36 H 1.09002 * 110.59476 * 80.79307 * 20 19 18 37 37 H 1.08998 * 110.03344 * 238.56761 * 21 17 8 38 38 H 1.09004 * 110.03049 * 359.94844 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2154 0.0921 5 6 3.6420 1.1694 -0.1082 6 1 4.0668 0.6063 0.7227 7 6 4.0591 0.5212 -1.4298 8 7 4.1326 2.5491 -0.0648 9 6 3.7772 3.4335 -1.0480 10 1 3.1297 4.2663 -0.8169 11 6 4.2495 3.2595 -2.3417 12 7 3.6441 3.8531 -3.3485 13 14 5.7437 2.1830 -2.6537 14 1 5.2996 0.8226 -3.0503 15 1 6.5609 2.7742 -3.7436 16 1 6.5587 2.0963 -1.4153 17 6 5.0035 2.9826 1.0306 18 6 4.3740 4.1867 1.7613 19 6 5.5824 5.0853 2.1237 20 6 6.4974 4.9448 0.8819 21 6 6.3536 3.4647 0.4715 22 1 -0.3634 0.4353 -0.9309 23 1 -0.3633 -1.0239 0.0884 24 1 -0.3634 0.5885 0.8424 25 1 1.9500 -0.8400 -0.0004 26 1 3.4822 -0.3905 -1.5854 27 1 3.8713 1.2144 -2.2497 28 1 5.1211 0.2778 -1.3958 29 1 3.9739 3.7313 -4.2526 30 1 5.1607 2.1613 1.7298 31 1 3.6882 4.7177 1.1011 32 1 3.8586 3.8583 2.6639 33 1 6.0847 4.7152 3.0175 34 1 5.2706 6.1210 2.2586 35 1 7.5315 5.1697 1.1427 36 1 6.1567 5.5982 0.0787 37 1 7.1661 2.8778 0.8998 38 1 6.3612 3.3752 -0.6148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:40 Heat of formation + Delta-G solvation = -16.973428 kcal Electronic energy + Delta-G solvation = -18895.378321 eV Core-core repulsion = 16159.421039 eV Total energy + Delta-G solvation = -2735.957281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72749 -39.12706 -36.34277 -35.37532 -33.74463 -31.68616 -29.41447 -28.29355 -27.73037 -26.29564 -23.51398 -21.50560 -21.03802 -20.63153 -19.12362 -17.82367 -17.36157 -16.53219 -16.29635 -16.17240 -15.76859 -15.11608 -15.06171 -14.73485 -14.11059 -13.97360 -13.70435 -13.46084 -13.09015 -13.06829 -12.96887 -12.60689 -12.29783 -11.97752 -11.83939 -11.72527 -11.35968 -11.25205 -10.88028 -10.81873 -10.52987 -10.27556 -9.90874 -8.27918 -7.89406 -5.87867 1.37469 1.52557 1.65197 1.97998 2.49131 2.52065 3.13471 3.34521 3.99195 4.01588 4.16389 4.28711 4.32403 4.44616 4.51752 4.64692 4.69662 4.77281 4.78646 4.87169 4.93817 4.95233 4.98473 5.00919 5.20222 5.23373 5.34042 5.35157 5.59168 5.67999 5.69298 5.71966 6.06111 6.57977 6.79560 7.28622 7.57521 7.70179 8.21553 9.07262 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.012146 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.830522 B = 2304.787736 C = 3022.510612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.488 3.512 4 O -0.568 6.568 5 C 0.146 3.854 6 H 0.121 0.879 7 C -0.184 4.184 8 N -0.587 5.587 9 C -0.227 4.227 10 H -0.008 1.008 11 C -0.008 4.008 12 N -0.957 5.957 13 Si 0.939 3.061 14 H -0.254 1.254 15 H -0.340 1.340 16 H -0.205 1.205 17 C 0.164 3.836 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.149 4.149 22 H 0.029 0.971 23 H 0.116 0.884 24 H 0.041 0.959 25 H 0.415 0.585 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.259 0.741 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -11.569 10.176 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.273 3.727 4 O -0.445 6.445 5 C 0.036 3.964 6 H 0.139 0.861 7 C -0.242 4.242 8 N -0.308 5.308 9 C -0.358 4.358 10 H 0.010 0.990 11 C -0.204 4.204 12 N -0.599 5.599 13 Si 0.767 3.233 14 H -0.180 1.180 15 H -0.272 1.272 16 H -0.129 1.129 17 C 0.059 3.941 18 C -0.170 4.170 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.188 4.188 22 H 0.048 0.952 23 H 0.134 0.866 24 H 0.060 0.940 25 H 0.251 0.749 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.826 -10.783 10.103 15.264 hybrid contribution -0.077 0.088 -1.068 1.074 sum 3.749 -10.695 9.036 14.494 Atomic orbital electron populations 1.21508 0.80106 1.03689 1.00187 1.45919 1.07687 1.08676 1.76783 1.22419 0.92497 0.83295 0.74455 1.90643 1.71085 1.33837 1.48903 1.20863 0.88443 0.88223 0.98826 0.86100 1.22992 1.02217 1.01105 0.97896 1.43976 1.54088 1.06830 1.25882 1.17700 1.23497 1.06584 0.87985 0.99033 1.26984 0.99888 0.98029 0.95513 1.70111 1.41620 1.48644 0.99488 0.86951 0.79677 0.78477 0.78155 1.17989 1.27175 1.12875 1.21452 0.88942 0.95350 0.88330 1.22663 0.97829 0.98076 0.98450 1.22377 0.95532 0.98883 0.97947 1.22237 0.99674 0.96465 0.97143 1.22972 0.97674 0.96225 1.01900 0.95185 0.86588 0.93989 0.74880 0.89510 0.93303 0.90558 0.93253 0.89865 0.95249 0.92572 0.89269 0.92449 0.90171 0.94960 0.90433 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.73 127.77 1.37 3.74 16 2 N -0.73 -21.63 5.42 -484.53 -2.63 -24.26 16 3 C 0.49 20.29 7.04 87.66 0.62 20.91 16 4 O -0.57 -30.89 15.36 -3.01 -0.05 -30.94 16 5 C 0.15 5.61 3.18 44.24 0.14 5.75 16 6 H 0.12 3.48 7.57 -2.39 -0.02 3.47 16 7 C -0.18 -6.78 6.48 71.98 0.47 -6.32 16 8 N -0.59 -27.11 1.39 -654.40 -0.91 -28.02 16 9 C -0.23 -13.28 6.67 84.04 0.56 -12.72 16 10 H -0.01 -0.56 7.25 -2.92 -0.02 -0.58 16 11 C -0.01 -0.49 4.38 84.86 0.37 -0.12 16 12 N -0.96 -62.47 13.97 21.65 0.30 -62.17 16 13 Si 0.94 43.76 21.26 68.60 1.46 45.22 16 14 H -0.25 -10.67 5.23 99.48 0.52 -10.15 16 15 H -0.34 -17.10 7.11 99.48 0.71 -16.40 16 16 H -0.21 -8.33 4.82 99.48 0.48 -7.85 16 17 C 0.16 6.35 3.44 45.72 0.16 6.51 16 18 C -0.13 -5.18 6.41 31.67 0.20 -4.98 16 19 C -0.11 -3.47 6.91 31.88 0.22 -3.25 16 20 C -0.12 -4.04 6.83 31.67 0.22 -3.82 16 21 C -0.15 -5.48 5.59 31.32 0.18 -5.30 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 25 H 0.41 8.40 8.39 -92.71 -0.78 7.63 16 26 H 0.09 2.51 7.38 -2.38 -0.02 2.50 16 27 H 0.05 2.30 3.42 -2.39 -0.01 2.29 16 28 H 0.08 2.52 5.69 -2.39 -0.01 2.50 16 29 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.08 2.63 7.59 -2.39 -0.02 2.61 16 31 H 0.03 1.46 6.53 -2.39 -0.02 1.45 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.61 3.02 -2.38 -0.01 2.60 16 Total: -1.00 -81.35 280.60 2.54 -78.82 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.14 Total: 20.96 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.50 Total: 0.39 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.24 Total: -114.45 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.46 Total: 45.22 kcal Total: -81.35 2.54 -78.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.842 kcal (2) G-P(sol) polarization free energy of solvation -81.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds