Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47685 * 2 1 4 4 C 1.53008 * 109.47178 * 120.00010 * 2 1 3 5 5 N 1.46495 * 109.46985 * 297.38815 * 4 2 1 6 6 C 1.36935 * 120.00094 * 95.98821 * 5 4 2 7 7 H 1.08003 * 120.00022 * 216.67242 * 6 5 4 8 8 C 1.38817 * 119.99928 * 36.67040 * 6 5 4 9 9 N 1.31622 * 120.00030 * 20.35768 * 8 6 5 10 10 Si 1.86800 * 119.99890 * 200.35950 * 8 6 5 11 11 H 1.48499 * 109.47468 * 90.00034 * 10 8 6 12 12 H 1.48507 * 109.46883 * 210.00035 * 10 8 6 13 13 H 1.48505 * 109.47174 * 329.99529 * 10 8 6 14 14 C 1.46497 * 119.99954 * 275.98781 * 5 4 2 15 15 C 1.54270 * 110.03367 * 237.90973 * 14 5 4 16 16 C 1.54963 * 104.16164 * 217.13913 * 15 14 5 17 17 C 1.54897 * 102.77930 * 37.88386 * 16 15 14 18 18 C 1.53875 * 110.03194 * 120.69211 * 14 5 4 19 19 C 1.50698 * 109.47038 * 239.99698 * 2 1 3 20 20 N 1.34780 * 119.99803 * 60.00019 * 19 2 1 21 21 O 1.21283 * 120.00601 * 240.00098 * 19 2 1 22 22 H 1.09001 * 109.47373 * 61.27664 * 1 2 3 23 23 H 1.09001 * 109.47592 * 181.28541 * 1 2 3 24 24 H 1.09008 * 109.47109 * 301.28333 * 1 2 3 25 25 H 1.08997 * 109.46680 * 57.39003 * 4 2 1 26 26 H 1.08996 * 109.46967 * 177.38762 * 4 2 1 27 27 H 0.96993 * 119.99819 * 179.97438 * 9 8 6 28 28 H 1.08996 * 110.01884 * 359.30256 * 14 5 4 29 29 H 1.09007 * 110.48332 * 335.78335 * 15 14 5 30 30 H 1.08997 * 110.48323 * 98.42700 * 15 14 5 31 31 H 1.09003 * 110.71405 * 279.57387 * 16 15 14 32 32 H 1.08998 * 110.92587 * 156.29543 * 16 15 14 33 33 H 1.09003 * 110.48476 * 203.40818 * 17 16 15 34 34 H 1.08997 * 110.59326 * 80.82050 * 17 16 15 35 35 H 1.09002 * 110.02997 * 238.56967 * 18 14 5 36 36 H 1.08995 * 110.03456 * 359.97438 * 18 14 5 37 37 H 0.97010 * 119.99815 * 180.02562 * 20 19 2 38 38 H 0.97001 * 119.99999 * 359.72445 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6037 0.0047 2.4446 6 6 0.4693 -0.3839 3.1057 7 1 -0.1809 0.3583 3.5448 8 6 0.1550 -1.7319 3.2116 9 7 1.0933 -2.6410 3.0520 10 14 -1.5998 -2.2556 3.5806 11 1 -2.3403 -2.4379 2.3064 12 1 -1.5864 -3.5359 4.3329 13 1 -2.2675 -1.2093 4.3959 14 6 2.3812 1.1465 2.9326 15 6 2.8285 0.8979 4.3879 16 6 2.7266 2.2910 5.0590 17 6 1.4497 2.8880 4.4170 18 6 1.5052 2.4114 2.9508 19 6 2.0323 -0.7105 -1.2304 20 7 1.7066 -0.2500 -2.4546 21 8 2.7295 -1.6966 -1.1192 22 1 -0.3634 0.4939 -0.9012 23 1 -0.3634 -1.0274 0.0231 24 1 -0.3634 0.5337 0.8783 25 1 1.6389 -1.7345 1.2729 26 1 3.1289 -0.7620 1.2262 27 1 0.8737 -3.5828 3.1263 28 1 3.2518 1.3044 2.2962 29 1 2.1598 0.1893 4.8768 30 1 3.8559 0.5350 4.4144 31 1 3.5994 2.8987 4.8202 32 1 2.6078 2.1954 6.1383 33 1 1.4717 3.9768 4.4653 34 1 0.5569 2.5031 4.9097 35 1 1.9513 3.1835 2.3238 36 1 0.5018 2.1759 2.5961 37 1 2.0297 -0.7076 -3.2466 38 1 1.1457 0.5363 -2.5436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = -40.028469 kcal Electronic energy + Delta-G solvation = -18500.618857 eV Core-core repulsion = 15763.661834 eV Total energy + Delta-G solvation = -2736.957023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.11513 -37.64928 -34.78377 -33.33669 -31.91989 -30.45794 -27.81958 -26.58714 -25.89433 -23.46494 -21.66907 -19.88552 -19.22631 -18.92616 -16.88889 -16.53659 -15.65990 -15.28977 -14.74798 -14.38033 -14.11537 -13.65739 -13.07746 -12.93554 -12.56287 -12.47665 -11.72786 -11.29553 -11.24709 -10.93908 -10.85130 -10.55697 -10.41800 -10.26869 -10.23296 -10.09618 -9.94268 -9.80230 -9.61821 -9.42453 -9.26161 -9.16475 -8.36508 -6.48145 -5.71217 -3.27828 3.23786 3.38056 3.46191 3.47338 4.03152 4.52588 5.31177 5.34967 5.48389 5.51005 5.58426 5.77212 5.86852 6.01891 6.15030 6.16386 6.30406 6.36359 6.46590 6.58094 6.58722 6.63995 6.73051 6.80053 6.88739 6.99875 7.07879 7.12522 7.16628 7.29578 7.43854 7.76945 7.86512 7.94331 8.60317 8.78909 9.27514 9.90970 10.49010 11.29542 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.011322 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.735911 B = 2472.411460 C = 3524.125380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 H 0.076 0.924 4 C 0.167 3.833 5 N -0.575 5.575 6 C -0.251 4.251 7 H 0.062 0.938 8 C 0.014 3.986 9 N -0.881 5.881 10 Si 0.887 3.113 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.168 3.832 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.134 4.134 19 C 0.520 3.480 20 N -0.866 5.866 21 O -0.543 6.543 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.027 0.973 27 H 0.254 0.746 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.390 0.610 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 9.356 -5.066 10.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 H 0.094 0.906 4 C 0.040 3.960 5 N -0.293 5.293 6 C -0.381 4.381 7 H 0.079 0.921 8 C -0.186 4.186 9 N -0.523 5.523 10 Si 0.717 3.283 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.061 3.939 15 C -0.169 4.169 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.173 4.173 19 C 0.305 3.695 20 N -0.430 5.430 21 O -0.419 6.419 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.231 8.521 -4.745 9.756 hybrid contribution -1.068 -0.102 -0.320 1.119 sum -0.837 8.419 -5.066 9.861 Atomic orbital electron populations 1.21581 0.93135 1.02268 1.01033 1.22130 0.98150 1.00329 0.94690 0.90553 1.20744 0.95704 0.98151 0.81384 1.43948 1.26866 1.32833 1.25694 1.18834 0.97959 0.89771 1.31491 0.92068 1.25164 0.96930 0.96884 0.99662 1.70001 1.30660 1.00374 1.51281 0.86537 0.85810 0.77949 0.77976 1.21371 1.21890 1.20341 1.21048 0.91876 0.87990 0.93023 1.22786 1.00357 0.95780 0.97953 1.22450 0.97153 0.97845 0.98768 1.22242 0.98140 0.98105 0.96975 1.22620 1.01819 0.97734 0.95144 1.21300 0.78756 0.84150 0.85248 1.44064 1.56591 1.34135 1.08242 1.90706 1.37824 1.26360 1.86984 0.95192 0.92947 0.89748 0.87771 0.95472 0.93563 0.93577 0.89659 0.93689 0.92962 0.92943 0.93555 0.92023 0.93958 0.91038 0.78026 0.77564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.62 37.16 0.32 -1.90 16 2 C -0.13 -2.44 2.94 -91.77 -0.27 -2.71 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.17 3.95 3.95 -4.04 -0.02 3.94 16 5 N -0.57 -13.33 2.10 -164.39 -0.34 -13.67 16 6 C -0.25 -6.30 6.05 -15.06 -0.09 -6.39 16 7 H 0.06 1.55 7.21 -52.48 -0.38 1.17 16 8 C 0.01 0.38 4.93 -17.43 -0.09 0.30 16 9 N -0.88 -25.22 11.43 55.49 0.63 -24.58 16 10 Si 0.89 21.09 29.60 -169.99 -5.03 16.06 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.17 3.41 3.42 -66.81 -0.23 3.18 16 15 C -0.13 -2.59 6.42 -25.03 -0.16 -2.75 16 16 C -0.12 -2.03 6.91 -24.69 -0.17 -2.20 16 17 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 18 C -0.13 -2.36 6.17 -25.61 -0.16 -2.51 16 19 C 0.52 9.62 7.43 -10.98 -0.08 9.54 16 20 N -0.87 -11.19 8.76 31.22 0.27 -10.92 16 21 O -0.54 -12.50 16.80 5.55 0.09 -12.41 16 22 H 0.03 0.42 7.52 -51.93 -0.39 0.03 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.08 1.65 6.72 -51.92 -0.35 1.30 16 25 H 0.10 2.88 5.49 -51.93 -0.29 2.59 16 26 H 0.03 0.67 7.94 -51.93 -0.41 0.26 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 29 H 0.08 1.99 7.03 -51.92 -0.37 1.62 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.36 7.02 -51.93 -0.36 0.99 16 37 H 0.39 4.41 8.93 -40.82 -0.36 4.05 16 38 H 0.40 3.95 8.22 -40.82 -0.34 3.61 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -29.86 301.13 -7.12 -36.99 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.17 Total: 7.58 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.11 Total: -3.58 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.56 Total: -49.17 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.86 -7.12 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.042 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds