Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47685 * 2 1 4 4 C 1.53008 * 109.47178 * 120.00010 * 2 1 3 5 5 N 1.46495 * 109.46985 * 297.38815 * 4 2 1 6 6 C 1.36935 * 120.00094 * 95.98821 * 5 4 2 7 7 H 1.08003 * 120.00022 * 216.67242 * 6 5 4 8 8 C 1.38817 * 119.99928 * 36.67040 * 6 5 4 9 9 N 1.31622 * 120.00030 * 20.35768 * 8 6 5 10 10 Si 1.86800 * 119.99890 * 200.35950 * 8 6 5 11 11 H 1.48499 * 109.47468 * 90.00034 * 10 8 6 12 12 H 1.48507 * 109.46883 * 210.00035 * 10 8 6 13 13 H 1.48505 * 109.47174 * 329.99529 * 10 8 6 14 14 C 1.46497 * 119.99954 * 275.98781 * 5 4 2 15 15 C 1.54270 * 110.03367 * 237.90973 * 14 5 4 16 16 C 1.54963 * 104.16164 * 217.13913 * 15 14 5 17 17 C 1.54897 * 102.77930 * 37.88386 * 16 15 14 18 18 C 1.53875 * 110.03194 * 120.69211 * 14 5 4 19 19 C 1.50698 * 109.47038 * 239.99698 * 2 1 3 20 20 N 1.34780 * 119.99803 * 60.00019 * 19 2 1 21 21 O 1.21283 * 120.00601 * 240.00098 * 19 2 1 22 22 H 1.09001 * 109.47373 * 61.27664 * 1 2 3 23 23 H 1.09001 * 109.47592 * 181.28541 * 1 2 3 24 24 H 1.09008 * 109.47109 * 301.28333 * 1 2 3 25 25 H 1.08997 * 109.46680 * 57.39003 * 4 2 1 26 26 H 1.08996 * 109.46967 * 177.38762 * 4 2 1 27 27 H 0.96993 * 119.99819 * 179.97438 * 9 8 6 28 28 H 1.08996 * 110.01884 * 359.30256 * 14 5 4 29 29 H 1.09007 * 110.48332 * 335.78335 * 15 14 5 30 30 H 1.08997 * 110.48323 * 98.42700 * 15 14 5 31 31 H 1.09003 * 110.71405 * 279.57387 * 16 15 14 32 32 H 1.08998 * 110.92587 * 156.29543 * 16 15 14 33 33 H 1.09003 * 110.48476 * 203.40818 * 17 16 15 34 34 H 1.08997 * 110.59326 * 80.82050 * 17 16 15 35 35 H 1.09002 * 110.02997 * 238.56967 * 18 14 5 36 36 H 1.08995 * 110.03456 * 359.97438 * 18 14 5 37 37 H 0.97010 * 119.99815 * 180.02562 * 20 19 2 38 38 H 0.97001 * 119.99999 * 359.72445 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6037 0.0047 2.4446 6 6 0.4693 -0.3839 3.1057 7 1 -0.1809 0.3583 3.5448 8 6 0.1550 -1.7319 3.2116 9 7 1.0933 -2.6410 3.0520 10 14 -1.5998 -2.2556 3.5806 11 1 -2.3403 -2.4379 2.3064 12 1 -1.5864 -3.5359 4.3329 13 1 -2.2675 -1.2093 4.3959 14 6 2.3812 1.1465 2.9326 15 6 2.8285 0.8979 4.3879 16 6 2.7266 2.2910 5.0590 17 6 1.4497 2.8880 4.4170 18 6 1.5052 2.4114 2.9508 19 6 2.0323 -0.7105 -1.2304 20 7 1.7066 -0.2500 -2.4546 21 8 2.7295 -1.6966 -1.1192 22 1 -0.3634 0.4939 -0.9012 23 1 -0.3634 -1.0274 0.0231 24 1 -0.3634 0.5337 0.8783 25 1 1.6389 -1.7345 1.2729 26 1 3.1289 -0.7620 1.2262 27 1 0.8737 -3.5828 3.1263 28 1 3.2518 1.3044 2.2962 29 1 2.1598 0.1893 4.8768 30 1 3.8559 0.5350 4.4144 31 1 3.5994 2.8987 4.8202 32 1 2.6078 2.1954 6.1383 33 1 1.4717 3.9768 4.4653 34 1 0.5569 2.5031 4.9097 35 1 1.9513 3.1835 2.3238 36 1 0.5018 2.1759 2.5961 37 1 2.0297 -0.7076 -3.2466 38 1 1.1457 0.5363 -2.5436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = -60.534788 kcal Electronic energy + Delta-G solvation = -18501.508078 eV Core-core repulsion = 15763.661834 eV Total energy + Delta-G solvation = -2737.846244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65607 -39.23257 -36.45714 -34.80091 -33.66283 -32.17258 -29.28417 -28.19070 -27.72301 -25.13412 -23.37204 -21.28873 -20.75258 -20.57962 -18.29002 -18.17019 -17.29394 -17.00248 -16.32660 -16.07340 -15.75141 -15.23835 -14.69753 -14.49061 -14.27615 -13.96868 -13.37439 -13.08155 -12.89999 -12.74328 -12.60407 -12.23326 -12.06195 -11.79150 -11.76128 -11.69020 -11.61347 -11.41974 -11.28078 -11.08351 -10.73046 -10.57606 -10.36668 -8.42873 -7.71571 -5.30751 1.46451 1.49354 1.56046 1.76063 2.54241 2.74755 3.36980 3.73293 4.04238 4.05825 4.17068 4.25592 4.36618 4.47640 4.69815 4.74802 4.83418 4.99517 5.00451 5.02954 5.09964 5.20123 5.24922 5.28774 5.31300 5.37836 5.59055 5.61594 5.75078 5.76978 5.81952 5.94692 6.02844 6.55566 6.59626 7.27406 7.47698 7.99962 8.52602 9.25962 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.011322 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.735911 B = 2472.411460 C = 3524.125380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 H 0.103 0.897 4 C 0.173 3.827 5 N -0.584 5.584 6 C -0.226 4.226 7 H 0.064 0.936 8 C -0.040 4.040 9 N -0.923 5.923 10 Si 0.940 3.060 11 H -0.286 1.286 12 H -0.305 1.305 13 H -0.265 1.265 14 C 0.158 3.842 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.124 4.124 19 C 0.519 3.481 20 N -0.834 5.834 21 O -0.597 6.597 22 H 0.077 0.923 23 H 0.021 0.979 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.001 0.999 27 H 0.244 0.756 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.404 0.596 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 12.621 -6.054 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.142 4.142 3 H 0.121 0.879 4 C 0.045 3.955 5 N -0.304 5.304 6 C -0.356 4.356 7 H 0.081 0.919 8 C -0.236 4.236 9 N -0.568 5.568 10 Si 0.769 3.231 11 H -0.213 1.213 12 H -0.233 1.233 13 H -0.189 1.189 14 C 0.052 3.948 15 C -0.171 4.171 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.163 4.163 19 C 0.305 3.695 20 N -0.398 5.398 21 O -0.478 6.478 22 H 0.096 0.904 23 H 0.040 0.960 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.236 0.764 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.578 11.867 -5.775 13.211 hybrid contribution -0.756 -1.045 -0.045 1.291 sum -1.334 10.822 -5.820 12.360 Atomic orbital electron populations 1.21485 0.92126 1.00687 1.02793 1.21837 0.98714 1.00784 0.92849 0.87936 1.20438 0.93932 0.97065 0.84021 1.44091 1.26908 1.33361 1.26012 1.18962 0.98058 0.89361 1.29260 0.91884 1.25757 0.99602 0.97242 1.00997 1.70168 1.32333 0.99970 1.54333 0.85687 0.82558 0.77189 0.77661 1.21293 1.23270 1.18909 1.21307 0.92452 0.88127 0.92923 1.22715 0.98842 0.97423 0.98152 1.22400 0.98378 0.95290 0.99018 1.22230 0.97268 1.00038 0.95532 1.22487 1.00401 0.96669 0.96769 1.21149 0.78317 0.83419 0.86629 1.43666 1.55274 1.34117 1.06783 1.90699 1.40511 1.28737 1.87832 0.90386 0.95963 0.91112 0.92002 0.98039 0.94697 0.93165 0.93767 0.94369 0.90544 0.92038 0.90249 0.93407 0.91142 0.92388 0.76444 0.75201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.90 8.62 71.98 0.62 -3.28 16 2 C -0.12 -4.35 2.94 -11.54 -0.03 -4.38 16 3 H 0.10 3.25 8.14 -2.39 -0.02 3.24 16 4 C 0.17 8.41 3.95 86.38 0.34 8.75 16 5 N -0.58 -27.45 2.10 -674.02 -1.41 -28.87 16 6 C -0.23 -11.51 6.05 84.03 0.51 -11.00 16 7 H 0.06 3.18 7.21 -2.91 -0.02 3.16 16 8 C -0.04 -2.17 4.93 84.86 0.42 -1.75 16 9 N -0.92 -55.69 11.43 21.65 0.25 -55.44 16 10 Si 0.94 44.45 29.60 68.60 2.03 46.48 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.16 6.28 3.42 45.72 0.16 6.43 16 15 C -0.13 -5.26 6.42 31.70 0.20 -5.05 16 16 C -0.11 -3.40 6.91 31.91 0.22 -3.18 16 17 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 18 C -0.12 -4.00 6.17 31.32 0.19 -3.81 16 19 C 0.52 18.68 7.43 87.66 0.65 19.33 16 20 N -0.83 -18.99 8.76 -173.53 -1.52 -20.51 16 21 O -0.60 -28.05 16.80 -3.04 -0.05 -28.10 16 22 H 0.08 1.91 7.52 -2.39 -0.02 1.89 16 23 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 2.64 6.72 -2.38 -0.02 2.63 16 25 H 0.06 3.61 5.49 -2.39 -0.01 3.60 16 26 H 0.00 0.06 7.94 -2.39 -0.02 0.04 16 27 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 29 H 0.04 2.11 7.03 -2.38 -0.02 2.10 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.05 7.02 -2.39 -0.02 2.03 16 37 H 0.40 7.93 8.93 -92.70 -0.83 7.10 16 38 H 0.42 6.42 8.22 -92.71 -0.76 5.65 16 Total: -1.00 -69.32 301.13 2.25 -67.07 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.53 Total: 20.39 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.50 Total: -1.01 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -2.69 Total: -104.82 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.32 2.25 -67.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds