Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 N 1.46496 * 109.47128 * 120.00152 * 2 1 3 5 5 C 1.36929 * 120.00241 * 293.99382 * 4 2 1 6 6 H 1.08005 * 120.00179 * 37.12500 * 5 4 2 7 7 C 1.38813 * 120.00324 * 217.13236 * 5 4 2 8 8 N 1.31617 * 119.99770 * 4.90095 * 7 5 4 9 9 Si 1.86807 * 120.00249 * 184.90769 * 7 5 4 10 10 H 1.48497 * 109.46881 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47213 * 119.99453 * 9 7 5 12 12 H 1.48506 * 109.46869 * 239.99742 * 9 7 5 13 13 C 1.46507 * 119.99838 * 113.99426 * 4 2 1 14 14 H 1.09006 * 109.46811 * 186.34447 * 13 4 2 15 15 C 1.53000 * 109.47113 * 306.33923 * 13 4 2 16 16 C 1.50701 * 109.47129 * 66.33997 * 13 4 2 17 17 O 1.21274 * 120.00028 * 359.97438 * 16 13 4 18 18 N 1.34775 * 119.99577 * 179.97438 * 16 13 4 19 19 C 1.46500 * 119.99780 * 180.27630 * 18 16 13 20 20 C 1.52992 * 117.50127 * 223.47132 * 19 18 16 21 21 C 1.52998 * 117.49955 * 154.81004 * 19 18 16 22 22 H 1.08996 * 109.47214 * 305.37964 * 1 2 3 23 23 H 1.09002 * 109.47449 * 65.37869 * 1 2 3 24 24 H 1.09003 * 109.47203 * 185.37665 * 1 2 3 25 25 H 1.09008 * 109.46904 * 239.99895 * 2 1 3 26 26 H 1.09007 * 109.46993 * 184.82716 * 3 2 1 27 27 H 1.09001 * 109.47169 * 304.82339 * 3 2 1 28 28 H 1.08997 * 109.47540 * 64.82810 * 3 2 1 29 29 H 0.97007 * 119.99974 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47148 * 180.02562 * 15 13 4 31 31 H 1.09004 * 109.47089 * 299.99813 * 15 13 4 32 32 H 1.08996 * 109.46757 * 60.00026 * 15 13 4 33 33 H 0.97002 * 120.00511 * 359.97438 * 18 16 13 34 34 H 1.09007 * 115.55041 * 9.14317 * 19 18 16 35 35 H 1.09004 * 117.49931 * 0.02562 * 20 19 18 36 36 H 1.08996 * 117.50077 * 145.01866 * 20 19 18 37 37 H 1.09006 * 117.49611 * 214.98194 * 21 19 18 38 38 H 1.09002 * 117.50143 * 359.97315 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7919 -0.1556 2.4361 6 1 0.8581 0.3449 2.6460 7 6 2.7626 -0.2563 3.4233 8 7 3.9367 -0.7795 3.1407 9 14 2.4023 0.3508 5.1528 10 1 1.0207 0.8921 5.2096 11 1 2.5324 -0.7768 6.1103 12 1 3.3677 1.4201 5.5132 13 6 2.7489 -1.9538 1.0656 14 1 2.9313 -2.3719 2.0557 15 6 1.9195 -2.9398 0.2406 16 6 4.0651 -1.7039 0.3754 17 8 4.3632 -0.5814 0.0264 18 7 4.9107 -2.7279 0.1460 19 6 6.1928 -2.4841 -0.5195 20 6 6.6244 -3.4719 -1.6052 21 6 7.3295 -3.4711 -0.2465 22 1 -0.3633 0.5950 0.8378 23 1 -0.3634 0.4281 -0.9342 24 1 -0.3634 -1.0232 0.0963 25 1 1.8933 -0.5139 -0.8900 26 1 3.1266 1.4437 -0.0865 27 1 1.6077 1.9806 -0.8436 28 1 1.7490 1.9308 0.9300 29 1 4.6150 -0.8502 3.8307 30 1 2.4629 -3.8798 0.1439 31 1 0.9675 -3.1206 0.7399 32 1 1.7370 -2.5217 -0.7493 33 1 4.6724 -3.6257 0.4255 34 1 6.4588 -1.4360 -0.6581 35 1 5.9542 -4.3030 -1.8246 36 1 7.1745 -3.0739 -2.4578 37 1 8.3433 -3.0726 -0.2059 38 1 7.1236 -4.3017 0.4286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = 5.424414 kcal Electronic energy + Delta-G solvation = -18544.329122 eV Core-core repulsion = 15809.343084 eV Total energy + Delta-G solvation = -2734.986038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.90805 -36.94373 -35.55992 -32.55389 -32.05913 -30.84473 -28.09049 -25.99594 -24.18622 -23.19410 -22.17458 -21.07480 -19.84420 -19.04661 -16.53134 -15.99089 -15.64129 -14.84579 -14.30278 -13.98509 -13.83992 -13.26428 -13.20728 -12.44466 -12.32771 -12.11345 -11.74207 -11.43935 -11.34127 -11.24937 -11.19015 -10.92736 -10.77352 -10.68757 -10.30899 -10.22135 -10.15006 -10.02700 -9.73209 -9.38133 -8.72795 -8.24124 -7.96088 -6.49891 -5.78157 -3.29565 3.37878 3.46578 3.47871 3.83902 3.96487 4.38449 4.52104 5.11974 5.26056 5.30593 5.36283 5.44136 5.77683 5.83138 6.00775 6.08835 6.14727 6.20533 6.25042 6.30154 6.40627 6.46385 6.54288 6.64292 6.87355 6.89007 6.94443 7.01507 7.29676 7.33726 7.39261 7.64850 7.86861 8.45300 8.57983 9.23790 9.54531 9.87208 10.43773 11.30788 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.009400 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.069824 B = 2978.045408 C = 3713.427956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 C -0.145 4.145 4 N -0.558 5.558 5 C -0.250 4.250 6 H 0.067 0.933 7 C 0.011 3.989 8 N -0.897 5.897 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.180 3.820 14 H 0.117 0.883 15 C -0.162 4.162 16 C 0.528 3.472 17 O -0.527 6.527 18 N -0.719 5.719 19 C 0.100 3.900 20 C -0.205 4.205 21 C -0.199 4.199 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.053 0.947 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.390 0.610 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 -6.478 -6.575 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 C -0.204 4.204 4 N -0.278 5.278 5 C -0.380 4.380 6 H 0.085 0.915 7 C -0.188 4.188 8 N -0.540 5.540 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.217 1.217 13 C 0.069 3.931 14 H 0.134 0.866 15 C -0.222 4.222 16 C 0.315 3.685 17 O -0.400 6.400 18 N -0.372 5.372 19 C -0.008 4.008 20 C -0.244 4.244 21 C -0.237 4.237 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.223 0.777 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.140 -5.591 -6.690 8.793 hybrid contribution 0.151 -0.162 1.174 1.195 sum 1.291 -5.753 -5.516 8.074 Atomic orbital electron populations 1.22252 0.99083 1.00610 0.99573 1.20222 0.91034 0.92547 0.89618 1.22024 1.01975 0.97163 0.99206 1.43643 1.62644 1.19801 1.01669 1.19058 0.98174 1.33343 0.87453 0.91515 1.25317 0.94715 0.99660 0.99101 1.69885 1.03988 1.47858 1.32276 0.86261 0.77682 0.78283 0.84763 1.20245 1.21763 1.21736 1.20137 0.86639 0.87579 0.98785 0.86595 1.22387 1.01060 0.98292 1.00439 1.22160 0.86576 0.83783 0.75962 1.90504 1.76425 1.22695 1.50405 1.45754 1.17641 1.11471 1.62296 1.21388 0.85430 0.96844 0.97094 1.23390 1.04406 1.03643 0.92971 1.23302 0.97963 1.03291 0.99170 0.93065 0.94614 0.93649 0.93777 0.91974 0.95772 0.92831 0.93700 0.93767 0.92187 0.93561 0.77679 0.85284 0.89052 0.88849 0.88712 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.18 37.16 0.34 -2.64 16 2 C 0.17 3.81 1.87 -67.94 -0.13 3.69 16 3 C -0.15 -3.27 9.08 37.16 0.34 -2.93 16 4 N -0.56 -13.64 2.00 -159.45 -0.32 -13.96 16 5 C -0.25 -6.67 8.02 -15.06 -0.12 -6.79 16 6 H 0.07 1.78 7.15 -52.48 -0.38 1.41 16 7 C 0.01 0.31 5.12 -17.43 -0.09 0.22 16 8 N -0.90 -25.27 10.39 55.49 0.58 -24.69 16 9 Si 0.90 21.61 29.56 -169.99 -5.02 16.58 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.18 4.05 2.13 -69.08 -0.15 3.91 16 14 H 0.12 2.88 6.29 -51.93 -0.33 2.55 16 15 C -0.16 -2.90 8.98 37.16 0.33 -2.57 16 16 C 0.53 11.97 5.99 -10.99 -0.07 11.91 16 17 O -0.53 -13.91 13.72 5.56 0.08 -13.83 16 18 N -0.72 -13.17 5.46 -53.81 -0.29 -13.46 16 19 C 0.10 1.66 6.43 -67.94 -0.44 1.22 16 20 C -0.21 -2.62 10.46 -26.70 -0.28 -2.90 16 21 C -0.20 -2.61 10.46 -26.70 -0.28 -2.89 16 22 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.98 6.54 -51.92 -0.34 0.64 16 26 H 0.06 1.57 6.78 -51.92 -0.35 1.22 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.04 0.66 7.57 -51.93 -0.39 0.26 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.82 6.85 -51.93 -0.36 0.46 16 33 H 0.39 6.12 8.25 -40.82 -0.34 5.79 16 34 H 0.13 2.43 7.40 -51.93 -0.38 2.04 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -30.37 305.24 -7.07 -37.44 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.15 Total: 7.11 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.53 Total: 0.21 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.04 Total: -52.11 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.37 -7.07 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.861 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds