Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 N 1.46496 * 109.47128 * 120.00152 * 2 1 3 5 5 C 1.36929 * 120.00241 * 293.99382 * 4 2 1 6 6 H 1.08005 * 120.00179 * 37.12500 * 5 4 2 7 7 C 1.38813 * 120.00324 * 217.13236 * 5 4 2 8 8 N 1.31617 * 119.99770 * 4.90095 * 7 5 4 9 9 Si 1.86807 * 120.00249 * 184.90769 * 7 5 4 10 10 H 1.48497 * 109.46881 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47213 * 119.99453 * 9 7 5 12 12 H 1.48506 * 109.46869 * 239.99742 * 9 7 5 13 13 C 1.46507 * 119.99838 * 113.99426 * 4 2 1 14 14 H 1.09006 * 109.46811 * 186.34447 * 13 4 2 15 15 C 1.53000 * 109.47113 * 306.33923 * 13 4 2 16 16 C 1.50701 * 109.47129 * 66.33997 * 13 4 2 17 17 O 1.21274 * 120.00028 * 359.97438 * 16 13 4 18 18 N 1.34775 * 119.99577 * 179.97438 * 16 13 4 19 19 C 1.46500 * 119.99780 * 180.27630 * 18 16 13 20 20 C 1.52992 * 117.50127 * 223.47132 * 19 18 16 21 21 C 1.52998 * 117.49955 * 154.81004 * 19 18 16 22 22 H 1.08996 * 109.47214 * 305.37964 * 1 2 3 23 23 H 1.09002 * 109.47449 * 65.37869 * 1 2 3 24 24 H 1.09003 * 109.47203 * 185.37665 * 1 2 3 25 25 H 1.09008 * 109.46904 * 239.99895 * 2 1 3 26 26 H 1.09007 * 109.46993 * 184.82716 * 3 2 1 27 27 H 1.09001 * 109.47169 * 304.82339 * 3 2 1 28 28 H 1.08997 * 109.47540 * 64.82810 * 3 2 1 29 29 H 0.97007 * 119.99974 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47148 * 180.02562 * 15 13 4 31 31 H 1.09004 * 109.47089 * 299.99813 * 15 13 4 32 32 H 1.08996 * 109.46757 * 60.00026 * 15 13 4 33 33 H 0.97002 * 120.00511 * 359.97438 * 18 16 13 34 34 H 1.09007 * 115.55041 * 9.14317 * 19 18 16 35 35 H 1.09004 * 117.49931 * 0.02562 * 20 19 18 36 36 H 1.08996 * 117.50077 * 145.01866 * 20 19 18 37 37 H 1.09006 * 117.49611 * 214.98194 * 21 19 18 38 38 H 1.09002 * 117.50143 * 359.97315 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7919 -0.1556 2.4361 6 1 0.8581 0.3449 2.6460 7 6 2.7626 -0.2563 3.4233 8 7 3.9367 -0.7795 3.1407 9 14 2.4023 0.3508 5.1528 10 1 1.0207 0.8921 5.2096 11 1 2.5324 -0.7768 6.1103 12 1 3.3677 1.4201 5.5132 13 6 2.7489 -1.9538 1.0656 14 1 2.9313 -2.3719 2.0557 15 6 1.9195 -2.9398 0.2406 16 6 4.0651 -1.7039 0.3754 17 8 4.3632 -0.5814 0.0264 18 7 4.9107 -2.7279 0.1460 19 6 6.1928 -2.4841 -0.5195 20 6 6.6244 -3.4719 -1.6052 21 6 7.3295 -3.4711 -0.2465 22 1 -0.3633 0.5950 0.8378 23 1 -0.3634 0.4281 -0.9342 24 1 -0.3634 -1.0232 0.0963 25 1 1.8933 -0.5139 -0.8900 26 1 3.1266 1.4437 -0.0865 27 1 1.6077 1.9806 -0.8436 28 1 1.7490 1.9308 0.9300 29 1 4.6150 -0.8502 3.8307 30 1 2.4629 -3.8798 0.1439 31 1 0.9675 -3.1206 0.7399 32 1 1.7370 -2.5217 -0.7493 33 1 4.6724 -3.6257 0.4255 34 1 6.4588 -1.4360 -0.6581 35 1 5.9542 -4.3030 -1.8246 36 1 7.1745 -3.0739 -2.4578 37 1 8.3433 -3.0726 -0.2059 38 1 7.1236 -4.3017 0.4286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -13.978815 kcal Electronic energy + Delta-G solvation = -18545.170509 eV Core-core repulsion = 15809.343084 eV Total energy + Delta-G solvation = -2735.827425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55147 -38.42582 -37.21427 -34.33910 -33.85775 -32.46035 -29.90670 -27.69368 -26.04418 -24.83424 -23.21103 -22.50642 -21.54390 -20.81777 -18.31779 -17.60576 -17.18400 -16.73401 -16.04340 -15.63668 -15.30621 -14.96519 -14.87753 -14.10566 -13.90135 -13.58877 -13.31564 -13.05733 -12.98585 -12.89550 -12.76215 -12.55996 -12.39702 -12.18175 -12.07430 -12.01015 -11.83557 -11.52578 -11.36511 -11.18513 -10.68436 -10.12267 -9.39412 -8.42345 -7.82150 -5.34706 1.44972 1.48782 1.57083 2.24309 2.49463 2.58994 3.13243 3.37744 3.62480 3.91049 4.13813 4.20322 4.31612 4.38736 4.58178 4.65771 4.75021 4.78005 4.86978 4.89933 4.98160 5.00421 5.12778 5.17741 5.22196 5.25525 5.27566 5.37972 5.59422 5.63655 5.73479 5.80835 5.95299 6.52862 6.93822 7.26598 7.81965 7.99304 8.45901 9.23662 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.009400 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.069824 B = 2978.045408 C = 3713.427956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.168 3.832 3 C -0.136 4.136 4 N -0.573 5.573 5 C -0.249 4.249 6 H 0.064 0.936 7 C -0.039 4.039 8 N -0.920 5.920 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.303 1.303 13 C 0.176 3.824 14 H 0.090 0.910 15 C -0.148 4.148 16 C 0.524 3.476 17 O -0.575 6.575 18 N -0.706 5.706 19 C 0.053 3.947 20 C -0.173 4.173 21 C -0.180 4.180 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.244 0.756 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.404 0.596 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -8.085 -7.568 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.062 3.938 3 C -0.195 4.195 4 N -0.293 5.293 5 C -0.380 4.380 6 H 0.081 0.919 7 C -0.235 4.235 8 N -0.564 5.564 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.231 1.231 13 C 0.064 3.936 14 H 0.107 0.893 15 C -0.207 4.207 16 C 0.312 3.688 17 O -0.453 6.453 18 N -0.359 5.359 19 C -0.054 4.054 20 C -0.212 4.212 21 C -0.218 4.218 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.567 -7.255 -7.702 10.596 hybrid contribution 0.379 0.328 1.413 1.500 sum 0.946 -6.927 -6.288 9.403 Atomic orbital electron populations 1.22094 0.96331 1.01174 1.00653 1.20359 0.92965 0.91676 0.88761 1.21927 0.99738 0.98225 0.99578 1.43868 1.62989 1.20862 1.01623 1.19238 0.97812 1.32438 0.88529 0.91867 1.25933 0.94790 1.00602 1.02197 1.70062 1.04556 1.49282 1.32540 0.85357 0.77413 0.77326 0.81227 1.19246 1.21452 1.23092 1.20210 0.87335 0.87759 0.98261 0.89271 1.22223 1.00755 0.98293 0.99474 1.22181 0.87178 0.83810 0.75641 1.90483 1.77423 1.24612 1.52746 1.45472 1.17715 1.11157 1.61522 1.21424 0.86032 0.96590 1.01357 1.23452 1.03254 1.01686 0.92801 1.23396 0.97167 1.01615 0.99606 0.94147 0.91716 0.92919 0.93891 0.95556 0.92519 0.94617 0.94660 0.90592 0.91759 0.93293 0.76087 0.88616 0.87406 0.87297 0.87508 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.18 71.98 0.66 -4.54 16 2 C 0.17 7.37 1.87 44.99 0.08 7.46 16 3 C -0.14 -6.19 9.08 71.98 0.65 -5.54 16 4 N -0.57 -28.23 2.00 -658.37 -1.32 -29.55 16 5 C -0.25 -13.46 8.02 84.03 0.67 -12.79 16 6 H 0.06 3.39 7.15 -2.91 -0.02 3.37 16 7 C -0.04 -2.15 5.12 84.86 0.43 -1.72 16 8 N -0.92 -53.32 10.39 21.65 0.22 -53.09 16 9 Si 0.96 45.27 29.56 68.60 2.03 47.29 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 13 C 0.18 7.92 2.13 44.24 0.09 8.01 16 14 H 0.09 4.51 6.29 -2.38 -0.01 4.49 16 15 C -0.15 -5.04 8.98 71.98 0.65 -4.40 16 16 C 0.52 24.16 5.99 87.66 0.53 24.68 16 17 O -0.58 -31.54 13.72 -3.01 -0.04 -31.58 16 18 N -0.71 -25.60 5.46 -442.55 -2.42 -28.01 16 19 C 0.05 1.72 6.43 44.99 0.29 2.01 16 20 C -0.17 -3.94 10.46 30.61 0.32 -3.62 16 21 C -0.18 -4.30 10.46 30.62 0.32 -3.98 16 22 H 0.04 1.53 7.44 -2.39 -0.02 1.52 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.88 6.54 -2.38 -0.02 1.86 16 26 H 0.03 1.35 6.78 -2.38 -0.02 1.33 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.03 1.70 7.37 -2.39 -0.02 1.68 16 29 H 0.24 14.03 8.31 -92.70 -0.77 13.26 16 30 H 0.08 2.06 7.57 -2.39 -0.02 2.04 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.63 6.85 -2.39 -0.02 1.62 16 33 H 0.40 12.09 8.25 -92.71 -0.76 11.33 16 34 H 0.10 3.77 7.40 -2.38 -0.02 3.75 16 35 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.98 305.24 3.46 -64.52 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.28 Total: 24.84 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.70 Total: 5.59 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.51 Total: -110.66 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.04 Total: -31.58 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.98 3.46 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.543 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds