Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46893 * 2 1 4 4 C 1.50699 * 109.47092 * 240.00510 * 2 1 3 5 5 H 1.08006 * 119.99654 * 275.19213 * 4 2 1 6 6 C 1.37871 * 120.00389 * 95.19059 * 4 2 1 7 7 N 1.31519 * 120.00110 * 174.96113 * 6 4 2 8 8 Si 1.86796 * 120.00013 * 354.68055 * 6 4 2 9 9 H 1.48501 * 109.47044 * 94.86398 * 8 6 4 10 10 H 1.48505 * 109.47171 * 214.86109 * 8 6 4 11 11 H 1.48502 * 109.47296 * 334.86182 * 8 6 4 12 12 N 1.46500 * 109.47265 * 119.99884 * 2 1 3 13 13 C 1.34773 * 119.99981 * 274.99718 * 12 2 1 14 14 O 1.21283 * 120.00161 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99811 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.74230 * 320.68061 * 15 13 12 17 17 C 1.50815 * 109.74525 * 81.41261 * 15 13 12 18 18 C 1.53820 * 111.62108 * 214.69320 * 17 15 13 19 19 C 1.54166 * 111.97032 * 319.03625 * 18 17 15 20 20 C 1.50754 * 112.61193 * 318.48649 * 19 18 17 21 21 C 1.54432 * 109.02218 * 93.01417 * 20 19 18 22 22 N 1.39775 * 111.77582 * 282.59728 * 21 20 19 23 23 H 1.08997 * 109.46547 * 295.05915 * 1 2 3 24 24 H 1.08997 * 109.46947 * 55.06255 * 1 2 3 25 25 H 1.08998 * 109.46357 * 175.06171 * 1 2 3 26 26 H 0.97001 * 120.00231 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99825 * 95.00224 * 12 2 1 28 28 H 1.08998 * 109.05174 * 335.24621 * 17 15 13 29 29 H 1.08998 * 109.05324 * 94.14002 * 17 15 13 30 30 H 1.09001 * 108.97623 * 198.39782 * 18 17 15 31 31 H 1.08996 * 108.91594 * 79.64002 * 18 17 15 32 32 H 1.09001 * 108.85368 * 197.67720 * 19 18 17 33 33 H 1.09001 * 108.77031 * 79.24108 * 19 18 17 34 34 H 1.08999 * 109.54246 * 333.15569 * 20 19 18 35 35 H 1.08997 * 109.62045 * 212.92168 * 20 19 18 36 36 H 1.08999 * 109.01908 * 162.00160 * 21 20 19 37 37 H 1.09006 * 108.95899 * 43.14892 * 21 20 19 38 38 H 1.00900 * 111.00501 * 189.12748 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1326 -1.7857 -1.2302 6 6 2.3640 0.0126 -2.3567 7 7 2.8953 -0.5949 -3.3952 8 14 2.0516 1.8534 -2.4106 9 1 3.2857 2.5768 -2.0117 10 1 1.6689 2.2505 -3.7894 11 1 0.9519 2.1965 -1.4734 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0182 2.3571 14 8 1.8584 1.1585 2.4117 15 6 2.6490 -0.7288 3.5877 16 1 2.2260 -1.7323 3.6316 17 6 4.1545 -0.8104 3.5506 18 6 4.6667 -2.1192 4.1757 19 6 3.8853 -2.4940 5.4507 20 6 3.6059 -1.3022 6.3306 21 6 2.2197 -0.7246 5.9705 22 7 2.2616 0.0291 4.7940 23 1 -0.3632 0.4353 0.9309 24 1 -0.3633 0.5885 -0.8424 25 1 -0.3632 -1.0239 -0.0885 26 1 3.1289 -0.0863 -4.1875 27 1 2.2491 -1.6317 1.1526 28 1 4.4883 -0.7565 2.5144 29 1 4.5703 0.0334 4.1012 30 1 5.7210 -2.0030 4.4272 31 1 4.5629 -2.9231 3.4470 32 1 4.4650 -3.2223 6.0177 33 1 2.9376 -2.9476 5.1606 34 1 4.3706 -0.5424 6.1691 35 1 3.6124 -1.6097 7.3762 36 1 1.8764 -0.0896 6.7871 37 1 1.5162 -1.5470 5.8406 38 1 1.3928 0.5210 4.6485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080999818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -50.533788 kcal Electronic energy + Delta-G solvation = -17976.422550 eV Core-core repulsion = 15239.009982 eV Total energy + Delta-G solvation = -2737.412568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88723 -37.86589 -34.90316 -33.45496 -32.55716 -32.04309 -29.66357 -26.00001 -25.36514 -25.22123 -21.92714 -20.52255 -19.73977 -19.26905 -17.82397 -16.55162 -15.74315 -15.54022 -14.87875 -14.56837 -14.48806 -13.90322 -13.80784 -13.65778 -13.01687 -12.56592 -12.37043 -12.10183 -12.03654 -11.53882 -11.45442 -11.20348 -11.09672 -10.77782 -10.70039 -10.52935 -10.48764 -10.29159 -9.86582 -9.19374 -9.02355 -8.73904 -8.27341 -8.07129 -6.24399 -4.27705 3.22816 3.28030 3.34469 3.41900 3.81626 4.32116 4.34746 4.74527 4.86758 4.88418 5.10362 5.16564 5.18636 5.40587 5.42806 5.50837 5.58941 5.76857 5.83488 5.96860 6.00363 6.12049 6.22146 6.30279 6.33569 6.46642 6.50043 6.65888 6.92293 7.15295 7.27068 7.40394 7.53552 7.60176 8.13566 8.57113 8.76471 8.97735 9.38208 10.87260 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036918 B = 0.006112 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.248389 B = 4579.699159 C = 4890.445050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.701 5.701 13 C 0.499 3.501 14 O -0.548 6.548 15 C 0.083 3.917 16 H 0.063 0.937 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.121 4.121 21 C 0.080 3.920 22 N -0.685 5.685 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.393 0.607 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.012 0.988 38 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -3.454 16.365 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.699 3.301 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.350 5.350 13 C 0.283 3.717 14 O -0.427 6.427 15 C -0.029 4.029 16 H 0.081 0.919 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.051 4.051 22 N -0.320 5.320 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.086 -2.421 16.285 16.500 hybrid contribution -0.767 -0.081 -0.390 0.864 sum 0.319 -2.502 15.895 16.094 Atomic orbital electron populations 1.22255 0.98784 1.00475 0.99261 1.19084 0.90694 0.94369 0.82915 0.93215 1.20999 1.45051 0.95577 0.95272 0.90376 1.24929 0.93317 0.98579 0.95492 1.69895 1.40609 1.36710 1.05267 0.86919 0.79944 0.85595 0.77646 1.20038 1.21051 1.18109 1.46604 1.64741 1.13838 1.09810 1.20503 0.78492 0.87682 0.84996 1.90647 1.51084 1.15846 1.85086 1.21152 0.97329 0.95552 0.88845 0.91906 1.21373 0.93099 0.98572 1.01840 1.21923 0.99526 0.97401 0.96580 1.21436 1.00369 0.97887 0.96267 1.21534 0.97780 0.98037 0.98567 1.20809 0.96152 0.95815 0.92304 1.57092 1.40796 1.32629 1.01501 0.95335 0.92844 0.93489 0.92274 0.77400 0.91076 0.90113 0.91944 0.91964 0.92366 0.92514 0.90610 0.91834 0.91177 0.96962 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.28 37.16 0.34 -2.91 16 2 C 0.23 5.52 2.10 -69.08 -0.15 5.37 16 3 H 0.05 1.30 5.04 -51.92 -0.26 1.04 16 4 C -0.53 -14.22 9.04 -34.44 -0.31 -14.53 16 5 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.87 21.51 26.60 -169.99 -4.52 16.99 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.26 -6.21 5.98 56.52 0.34 -5.87 16 12 N -0.70 -14.10 5.07 -54.93 -0.28 -14.37 16 13 C 0.50 9.61 6.65 -10.99 -0.07 9.53 16 14 O -0.55 -12.53 15.75 5.55 0.09 -12.44 16 15 C 0.08 1.23 2.56 -69.55 -0.18 1.05 16 16 H 0.06 0.85 6.66 -51.93 -0.35 0.50 16 17 C -0.11 -1.52 4.97 -27.40 -0.14 -1.66 16 18 C -0.12 -1.28 5.91 -25.70 -0.15 -1.43 16 19 C -0.12 -1.20 5.32 -27.25 -0.14 -1.35 16 20 C -0.12 -1.20 5.65 -27.11 -0.15 -1.36 16 21 C 0.08 0.88 6.00 -6.75 -0.04 0.84 16 22 N -0.68 -9.51 5.70 -112.67 -0.64 -10.15 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.18 7.00 -51.93 -0.36 0.81 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.39 7.02 8.59 -40.82 -0.35 6.67 16 28 H 0.07 1.08 7.71 -51.93 -0.40 0.68 16 29 H 0.08 1.17 7.26 -51.93 -0.38 0.79 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 34 H 0.08 0.83 7.11 -51.93 -0.37 0.46 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.01 0.14 7.54 -51.93 -0.39 -0.26 16 38 H 0.35 5.22 7.88 -39.29 -0.31 4.91 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -30.32 294.95 -7.32 -37.64 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.09 Total: 7.51 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.09 Total: -4.26 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.15 Total: -49.87 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.52 Total: 16.99 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.32 -7.32 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080999818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.897 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds