Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46893 * 2 1 4 4 C 1.50699 * 109.47092 * 240.00510 * 2 1 3 5 5 H 1.08006 * 119.99654 * 275.19213 * 4 2 1 6 6 C 1.37871 * 120.00389 * 95.19059 * 4 2 1 7 7 N 1.31519 * 120.00110 * 174.96113 * 6 4 2 8 8 Si 1.86796 * 120.00013 * 354.68055 * 6 4 2 9 9 H 1.48501 * 109.47044 * 94.86398 * 8 6 4 10 10 H 1.48505 * 109.47171 * 214.86109 * 8 6 4 11 11 H 1.48502 * 109.47296 * 334.86182 * 8 6 4 12 12 N 1.46500 * 109.47265 * 119.99884 * 2 1 3 13 13 C 1.34773 * 119.99981 * 274.99718 * 12 2 1 14 14 O 1.21283 * 120.00161 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99811 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.74230 * 320.68061 * 15 13 12 17 17 C 1.50815 * 109.74525 * 81.41261 * 15 13 12 18 18 C 1.53820 * 111.62108 * 214.69320 * 17 15 13 19 19 C 1.54166 * 111.97032 * 319.03625 * 18 17 15 20 20 C 1.50754 * 112.61193 * 318.48649 * 19 18 17 21 21 C 1.54432 * 109.02218 * 93.01417 * 20 19 18 22 22 N 1.39775 * 111.77582 * 282.59728 * 21 20 19 23 23 H 1.08997 * 109.46547 * 295.05915 * 1 2 3 24 24 H 1.08997 * 109.46947 * 55.06255 * 1 2 3 25 25 H 1.08998 * 109.46357 * 175.06171 * 1 2 3 26 26 H 0.97001 * 120.00231 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99825 * 95.00224 * 12 2 1 28 28 H 1.08998 * 109.05174 * 335.24621 * 17 15 13 29 29 H 1.08998 * 109.05324 * 94.14002 * 17 15 13 30 30 H 1.09001 * 108.97623 * 198.39782 * 18 17 15 31 31 H 1.08996 * 108.91594 * 79.64002 * 18 17 15 32 32 H 1.09001 * 108.85368 * 197.67720 * 19 18 17 33 33 H 1.09001 * 108.77031 * 79.24108 * 19 18 17 34 34 H 1.08999 * 109.54246 * 333.15569 * 20 19 18 35 35 H 1.08997 * 109.62045 * 212.92168 * 20 19 18 36 36 H 1.08999 * 109.01908 * 162.00160 * 21 20 19 37 37 H 1.09006 * 108.95899 * 43.14892 * 21 20 19 38 38 H 1.00900 * 111.00501 * 189.12748 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1326 -1.7857 -1.2302 6 6 2.3640 0.0126 -2.3567 7 7 2.8953 -0.5949 -3.3952 8 14 2.0516 1.8534 -2.4106 9 1 3.2857 2.5768 -2.0117 10 1 1.6689 2.2505 -3.7894 11 1 0.9519 2.1965 -1.4734 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0182 2.3571 14 8 1.8584 1.1585 2.4117 15 6 2.6490 -0.7288 3.5877 16 1 2.2260 -1.7323 3.6316 17 6 4.1545 -0.8104 3.5506 18 6 4.6667 -2.1192 4.1757 19 6 3.8853 -2.4940 5.4507 20 6 3.6059 -1.3022 6.3306 21 6 2.2197 -0.7246 5.9705 22 7 2.2616 0.0291 4.7940 23 1 -0.3632 0.4353 0.9309 24 1 -0.3633 0.5885 -0.8424 25 1 -0.3632 -1.0239 -0.0885 26 1 3.1289 -0.0863 -4.1875 27 1 2.2491 -1.6317 1.1526 28 1 4.4883 -0.7565 2.5144 29 1 4.5703 0.0334 4.1012 30 1 5.7210 -2.0030 4.4272 31 1 4.5629 -2.9231 3.4470 32 1 4.4650 -3.2223 6.0177 33 1 2.9376 -2.9476 5.1606 34 1 4.3706 -0.5424 6.1691 35 1 3.6124 -1.6097 7.3762 36 1 1.8764 -0.0896 6.7871 37 1 1.5162 -1.5470 5.8406 38 1 1.3928 0.5210 4.6485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080999818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -72.794981 kcal Electronic energy + Delta-G solvation = -17977.387867 eV Core-core repulsion = 15239.009982 eV Total energy + Delta-G solvation = -2738.377885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24198 -39.14386 -36.71240 -34.54826 -34.28404 -33.36276 -31.36288 -27.35141 -27.03644 -26.27263 -23.38659 -21.75409 -21.30500 -20.42357 -19.40742 -18.23129 -17.37780 -16.89786 -16.23337 -15.75416 -15.70333 -15.36935 -14.92602 -14.86786 -14.63547 -14.44904 -14.16300 -13.40183 -13.16511 -13.00610 -12.93747 -12.75409 -12.57585 -12.37035 -12.11711 -11.85180 -11.53153 -11.36059 -11.23492 -11.19221 -10.88967 -10.58271 -9.82890 -9.29791 -8.40141 -6.46011 1.28033 1.33798 1.44907 1.71285 2.26501 2.32919 3.02331 3.22828 3.80071 3.87377 4.03547 4.09160 4.19060 4.24092 4.41653 4.45808 4.57622 4.71136 4.71888 4.81035 4.90799 4.94348 5.06445 5.08880 5.19216 5.26523 5.32052 5.34724 5.42359 5.45409 5.55622 5.72395 6.07506 6.21359 6.56673 6.58702 6.88647 7.19965 7.42145 8.74753 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036918 B = 0.006112 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.248389 B = 4579.699159 C = 4890.445050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.235 3.765 3 H 0.028 0.972 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.924 3.076 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.250 1.250 12 N -0.701 5.701 13 C 0.498 3.502 14 O -0.585 6.585 15 C 0.096 3.904 16 H 0.082 0.918 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.118 4.118 21 C 0.075 3.925 22 N -0.693 5.693 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.270 0.730 27 H 0.404 0.596 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.020 0.980 38 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -3.905 18.326 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.131 3.869 3 H 0.046 0.954 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.749 3.251 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.174 1.174 12 N -0.350 5.350 13 C 0.285 3.715 14 O -0.465 6.465 15 C -0.016 4.016 16 H 0.100 0.900 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.056 4.056 22 N -0.328 5.328 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.239 0.761 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.853 -2.901 18.273 18.521 hybrid contribution -0.677 0.016 -0.937 1.156 sum 0.175 -2.885 17.336 17.575 Atomic orbital electron populations 1.22140 0.97066 1.01309 0.99559 1.18851 0.91937 0.93014 0.83117 0.95424 1.21174 1.44159 0.94756 0.96390 0.92509 1.25601 0.93483 1.02280 0.95369 1.69988 1.42437 1.38281 1.06078 0.86094 0.79739 0.81183 0.78095 1.20449 1.20036 1.17397 1.46369 1.64944 1.14347 1.09313 1.21238 0.77259 0.87293 0.85732 1.90625 1.52527 1.17626 1.85756 1.21055 0.97781 0.95696 0.87034 0.89998 1.21351 0.92262 1.00134 1.00840 1.21904 1.00216 0.95648 0.97247 1.21441 1.00439 0.98223 0.95708 1.21536 0.96542 0.97649 0.99900 1.20969 0.97191 0.96113 0.91293 1.57161 1.40599 1.33170 1.01851 0.94448 0.93222 0.92270 0.92038 0.76076 0.93019 0.91008 0.90956 0.91541 0.90506 0.92530 0.91766 0.89645 0.89872 0.96236 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.28 71.98 0.67 -5.37 16 2 C 0.23 11.08 2.10 44.25 0.09 11.18 16 3 H 0.03 1.44 5.04 -2.38 -0.01 1.43 16 4 C -0.53 -28.37 9.04 25.60 0.23 -28.14 16 5 H 0.06 3.25 8.06 -2.91 -0.02 3.22 16 6 C 0.03 1.87 5.47 84.65 0.46 2.33 16 7 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 8 Si 0.92 44.47 26.60 68.60 1.82 46.29 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.25 -11.66 5.98 99.48 0.59 -11.06 16 12 N -0.70 -27.75 5.07 -446.08 -2.26 -30.01 16 13 C 0.50 18.84 6.65 87.66 0.58 19.43 16 14 O -0.58 -26.57 15.75 -3.04 -0.05 -26.62 16 15 C 0.10 2.70 2.56 43.32 0.11 2.81 16 16 H 0.08 2.00 6.66 -2.39 -0.02 1.99 16 17 C -0.11 -2.83 4.97 30.16 0.15 -2.68 16 18 C -0.11 -2.20 5.91 31.27 0.18 -2.02 16 19 C -0.12 -1.98 5.32 30.26 0.16 -1.82 16 20 C -0.12 -1.99 5.65 30.35 0.17 -1.82 16 21 C 0.07 1.45 6.00 88.07 0.53 1.97 16 22 N -0.69 -18.11 5.70 -510.38 -2.91 -21.02 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 2.12 7.00 -2.39 -0.02 2.10 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.40 14.15 8.59 -92.71 -0.80 13.35 16 28 H 0.05 1.55 7.71 -2.39 -0.02 1.53 16 29 H 0.07 2.02 7.26 -2.39 -0.02 2.00 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.95 6.57 -2.39 -0.02 0.93 16 34 H 0.06 1.25 7.11 -2.39 -0.02 1.24 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 0.36 7.54 -2.38 -0.02 0.35 16 38 H 0.35 9.85 7.88 -89.69 -0.71 9.14 16 Total: -1.00 -64.66 294.95 -0.31 -64.97 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.56 Total: 25.55 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 3.34 Total: -4.13 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.87 Total: -106.06 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.82 Total: 46.29 kcal Total: -64.66 -0.31 -64.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080999818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.827 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds