Wall clock time and date at job start Mon Mar 30 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47402 * 2 1 4 4 C 1.46502 * 120.00015 * 265.37014 * 3 2 1 5 5 C 1.50697 * 109.47063 * 269.99970 * 4 3 2 6 6 H 1.08001 * 120.00175 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00322 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00310 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99670 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47270 * 89.99723 * 9 7 5 11 11 H 1.48504 * 109.46896 * 209.99932 * 9 7 5 12 12 H 1.48502 * 109.47110 * 329.99489 * 9 7 5 13 13 C 1.34772 * 120.00332 * 85.36393 * 3 2 1 14 14 O 1.21279 * 120.00211 * 185.02485 * 13 3 2 15 15 C 1.50707 * 119.99839 * 5.02789 * 13 3 2 16 16 H 1.09005 * 110.28307 * 328.89460 * 15 13 3 17 17 C 1.54374 * 110.41082 * 206.71037 * 15 13 3 18 18 N 1.48557 * 104.59636 * 217.20554 * 17 15 13 19 19 C 1.48561 * 104.22069 * 39.48257 * 18 17 15 20 20 C 1.54259 * 110.32177 * 91.02004 * 15 13 3 21 21 H 1.08999 * 110.40868 * 237.93490 * 20 15 13 22 22 C 1.52990 * 110.32728 * 0.10567 * 20 15 13 23 23 H 1.09000 * 109.47123 * 185.10304 * 1 2 3 24 24 H 1.09000 * 109.47166 * 305.09574 * 1 2 3 25 25 H 1.08996 * 109.47638 * 65.09959 * 1 2 3 26 26 H 1.08999 * 109.46906 * 239.99910 * 2 1 3 27 27 H 1.09002 * 109.47235 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.46842 * 29.99370 * 4 3 2 29 29 H 1.08996 * 109.47662 * 149.99432 * 4 3 2 30 30 H 0.97000 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09005 * 110.41283 * 98.42307 * 17 15 13 32 32 H 1.09003 * 110.41294 * 335.98756 * 17 15 13 33 33 H 1.00900 * 110.99936 * 279.92634 * 18 17 15 34 34 H 1.08998 * 110.41217 * 79.29563 * 19 18 17 35 35 H 1.08993 * 110.41105 * 201.62079 * 19 18 17 36 36 H 1.08997 * 109.47469 * 175.79770 * 22 20 15 37 37 H 1.09003 * 109.46864 * 295.79469 * 22 20 15 38 38 H 1.09004 * 109.47700 * 55.79427 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3592 2.0376 -1.2646 5 6 3.8111 1.7906 -1.5835 6 1 4.4194 1.2037 -0.9112 7 6 4.3631 2.3138 -2.7335 8 7 5.6304 2.0986 -3.0116 9 14 3.3109 3.3284 -3.8967 10 1 3.3823 4.7597 -3.5079 11 1 3.8117 3.1670 -5.2854 12 1 1.9021 2.8647 -3.8217 13 6 2.1541 2.0480 1.1633 14 8 2.4707 3.2187 1.1579 15 6 1.9126 1.3388 2.4710 16 1 1.1597 0.5606 2.3454 17 6 1.4688 2.3444 3.5549 18 7 2.1186 1.8628 4.8009 19 6 3.4675 1.4212 4.3620 20 6 3.2275 0.7314 3.0018 21 1 3.1217 -0.3450 3.1368 22 6 4.3790 1.0351 2.0415 23 1 -0.3633 -1.0236 0.0914 24 1 -0.3633 0.5908 0.8408 25 1 -0.3634 0.4327 -0.9321 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7378 1.6324 -2.0632 29 1 2.1838 3.1098 -1.1763 30 1 6.0186 2.4665 -3.8209 31 1 0.3842 2.3330 3.6628 32 1 1.8166 3.3476 3.3080 33 1 1.6013 1.0969 5.2057 34 1 4.1280 2.2798 4.2414 35 1 3.8886 0.7163 5.0787 36 1 5.3127 0.6653 2.4652 37 1 4.1942 0.5443 1.0859 38 1 4.4506 2.1121 1.8889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082559548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:23 Heat of formation + Delta-G solvation = -35.812142 kcal Electronic energy + Delta-G solvation = -18542.600237 eV Core-core repulsion = 15805.826048 eV Total energy + Delta-G solvation = -2736.774189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19078 -37.49092 -35.37944 -32.76007 -31.81079 -30.50076 -29.48454 -27.47683 -25.20873 -23.18762 -22.95324 -21.64542 -20.18113 -17.78828 -17.06094 -16.91148 -16.20345 -15.54915 -14.62648 -14.37401 -14.15494 -13.57277 -13.51504 -13.25321 -12.92258 -12.49245 -12.14699 -12.01803 -11.88252 -11.60302 -11.52947 -11.45730 -11.05756 -10.86055 -10.74131 -10.57606 -10.52549 -10.34396 -10.16189 -9.52614 -9.00627 -8.61364 -8.59682 -7.70300 -6.09800 -4.08439 3.28306 3.31763 3.34324 3.36678 3.80832 4.27520 4.38819 4.77770 4.86086 5.06335 5.15672 5.24464 5.30476 5.40593 5.48470 5.51246 5.60013 5.67984 5.75964 5.92341 5.96169 6.11005 6.11747 6.23575 6.28999 6.37840 6.47665 6.63722 6.72257 6.85834 6.96606 7.34240 7.37786 7.60739 8.26872 8.46325 8.92432 9.00332 9.51066 11.03238 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.007849 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.271232 B = 3566.517754 C = 3897.806630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.593 5.593 4 C 0.215 3.785 5 C -0.528 4.528 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.529 3.471 14 O -0.541 6.541 15 C -0.148 4.148 16 H 0.088 0.912 17 C 0.052 3.948 18 N -0.667 5.667 19 C 0.045 3.955 20 C -0.108 4.108 21 H 0.074 0.926 22 C -0.155 4.155 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.331 0.669 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 -6.179 10.787 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.094 3.906 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.315 3.685 14 O -0.419 6.419 15 C -0.171 4.171 16 H 0.106 0.894 17 C -0.078 4.078 18 N -0.292 5.292 19 C -0.085 4.085 20 C -0.129 4.129 21 H 0.092 0.908 22 C -0.212 4.212 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.791 -4.837 10.939 14.844 hybrid contribution -0.587 -0.554 -1.389 1.606 sum -9.377 -5.391 9.551 14.430 Atomic orbital electron populations 1.22266 0.96852 1.01443 1.02313 1.21418 0.93219 0.84133 1.02984 1.47916 1.63850 1.13117 1.07528 1.19654 0.96723 0.93944 0.80247 1.21363 0.93675 1.34125 1.07528 0.90441 1.24848 0.94833 0.95687 0.97584 1.69893 1.11993 1.45522 1.26170 0.86875 0.81031 0.81517 0.80413 1.19943 1.21120 1.19137 1.19891 0.77029 0.86834 0.84713 1.90642 1.47919 1.16427 1.86918 1.22870 0.99079 0.99559 0.95596 0.89354 1.23046 0.98444 0.99979 0.86320 1.63317 1.03799 1.36884 1.25199 1.23145 0.92223 0.99348 0.93779 1.22382 0.94388 0.99450 0.96642 0.90752 1.22012 0.96265 1.03832 0.99128 0.92041 0.92952 0.92237 0.89721 0.91593 0.95464 0.94577 0.92593 0.91055 0.88191 0.85454 0.89779 0.90950 0.92898 0.91014 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.96 37.16 0.37 -1.76 16 2 C 0.11 1.65 5.74 -4.04 -0.02 1.62 16 3 N -0.59 -11.90 2.04 -175.06 -0.36 -12.26 16 4 C 0.21 5.20 4.25 -5.19 -0.02 5.18 16 5 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 6 H 0.08 2.35 6.98 -52.49 -0.37 1.98 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.53 10.51 4.62 -10.98 -0.05 10.46 16 14 O -0.54 -13.06 14.49 5.56 0.08 -12.98 16 15 C -0.15 -2.20 2.53 -90.39 -0.23 -2.43 16 16 H 0.09 1.12 5.68 -51.93 -0.29 0.82 16 17 C 0.05 0.74 6.96 -2.19 -0.02 0.72 16 18 N -0.67 -8.31 7.62 -109.66 -0.84 -9.15 16 19 C 0.04 0.57 7.01 -2.18 -0.02 0.56 16 20 C -0.11 -1.51 3.47 -89.24 -0.31 -1.82 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.15 -2.72 7.93 37.15 0.29 -2.43 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 27 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 28 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 29 H 0.04 0.95 6.79 -51.93 -0.35 0.59 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.72 6.86 -51.93 -0.36 1.36 16 33 H 0.33 3.31 8.92 -39.29 -0.35 2.96 16 34 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.43 6.33 -51.93 -0.33 1.10 16 38 H 0.07 1.51 6.81 -51.93 -0.35 1.15 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -32.25 296.61 -7.00 -39.25 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.02 Total: 3.45 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.44 Total: -3.07 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.42 Total: -48.03 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.25 -7.00 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082559548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.434 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds