Wall clock time and date at job start Mon Mar 30 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47402 * 2 1 4 4 C 1.46502 * 120.00015 * 265.37014 * 3 2 1 5 5 C 1.50697 * 109.47063 * 269.99970 * 4 3 2 6 6 H 1.08001 * 120.00175 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00322 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00310 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99670 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47270 * 89.99723 * 9 7 5 11 11 H 1.48504 * 109.46896 * 209.99932 * 9 7 5 12 12 H 1.48502 * 109.47110 * 329.99489 * 9 7 5 13 13 C 1.34772 * 120.00332 * 85.36393 * 3 2 1 14 14 O 1.21279 * 120.00211 * 185.02485 * 13 3 2 15 15 C 1.50707 * 119.99839 * 5.02789 * 13 3 2 16 16 H 1.09005 * 110.28307 * 328.89460 * 15 13 3 17 17 C 1.54374 * 110.41082 * 206.71037 * 15 13 3 18 18 N 1.48557 * 104.59636 * 217.20554 * 17 15 13 19 19 C 1.48561 * 104.22069 * 39.48257 * 18 17 15 20 20 C 1.54259 * 110.32177 * 91.02004 * 15 13 3 21 21 H 1.08999 * 110.40868 * 237.93490 * 20 15 13 22 22 C 1.52990 * 110.32728 * 0.10567 * 20 15 13 23 23 H 1.09000 * 109.47123 * 185.10304 * 1 2 3 24 24 H 1.09000 * 109.47166 * 305.09574 * 1 2 3 25 25 H 1.08996 * 109.47638 * 65.09959 * 1 2 3 26 26 H 1.08999 * 109.46906 * 239.99910 * 2 1 3 27 27 H 1.09002 * 109.47235 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.46842 * 29.99370 * 4 3 2 29 29 H 1.08996 * 109.47662 * 149.99432 * 4 3 2 30 30 H 0.97000 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09005 * 110.41283 * 98.42307 * 17 15 13 32 32 H 1.09003 * 110.41294 * 335.98756 * 17 15 13 33 33 H 1.00900 * 110.99936 * 279.92634 * 18 17 15 34 34 H 1.08998 * 110.41217 * 79.29563 * 19 18 17 35 35 H 1.08993 * 110.41105 * 201.62079 * 19 18 17 36 36 H 1.08997 * 109.47469 * 175.79770 * 22 20 15 37 37 H 1.09003 * 109.46864 * 295.79469 * 22 20 15 38 38 H 1.09004 * 109.47700 * 55.79427 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3592 2.0376 -1.2646 5 6 3.8111 1.7906 -1.5835 6 1 4.4194 1.2037 -0.9112 7 6 4.3631 2.3138 -2.7335 8 7 5.6304 2.0986 -3.0116 9 14 3.3109 3.3284 -3.8967 10 1 3.3823 4.7597 -3.5079 11 1 3.8117 3.1670 -5.2854 12 1 1.9021 2.8647 -3.8217 13 6 2.1541 2.0480 1.1633 14 8 2.4707 3.2187 1.1579 15 6 1.9126 1.3388 2.4710 16 1 1.1597 0.5606 2.3454 17 6 1.4688 2.3444 3.5549 18 7 2.1186 1.8628 4.8009 19 6 3.4675 1.4212 4.3620 20 6 3.2275 0.7314 3.0018 21 1 3.1217 -0.3450 3.1368 22 6 4.3790 1.0351 2.0415 23 1 -0.3633 -1.0236 0.0914 24 1 -0.3633 0.5908 0.8408 25 1 -0.3634 0.4327 -0.9321 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7378 1.6324 -2.0632 29 1 2.1838 3.1098 -1.1763 30 1 6.0186 2.4665 -3.8209 31 1 0.3842 2.3330 3.6628 32 1 1.8166 3.3476 3.3080 33 1 1.6013 1.0969 5.2057 34 1 4.1280 2.2798 4.2414 35 1 3.8886 0.7163 5.0787 36 1 5.3127 0.6653 2.4652 37 1 4.1942 0.5443 1.0859 38 1 4.4506 2.1121 1.8889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082559548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:23 Heat of formation + Delta-G solvation = -60.068566 kcal Electronic energy + Delta-G solvation = -18543.652075 eV Core-core repulsion = 15805.826048 eV Total energy + Delta-G solvation = -2737.826027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59518 -38.81256 -36.98102 -34.86408 -33.05556 -32.06222 -30.72504 -29.23282 -26.48909 -24.89894 -24.30241 -22.88085 -21.60444 -19.23551 -19.10986 -18.23829 -17.54711 -17.15172 -16.30541 -15.91558 -15.55960 -14.88406 -14.83809 -14.61610 -14.51304 -14.19127 -13.66443 -13.40209 -13.25840 -13.20104 -13.02951 -12.72843 -12.53666 -12.44703 -12.13056 -12.05427 -11.92829 -11.77973 -11.69771 -11.54542 -10.83873 -10.58462 -9.68789 -9.38560 -8.34263 -6.38067 1.29438 1.33448 1.41248 1.79175 2.28835 2.31216 2.99847 3.19816 3.59125 3.67612 3.93452 3.99441 4.15098 4.23389 4.37247 4.38477 4.49818 4.57249 4.59690 4.73955 4.77003 4.87557 4.91737 4.97220 4.99314 5.05707 5.07416 5.19298 5.34856 5.36440 5.46903 5.59227 5.68377 6.25565 6.53510 6.64727 6.73549 7.22511 7.45300 8.82039 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.007849 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.271232 B = 3566.517754 C = 3897.806630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.224 3.776 5 C -0.531 4.531 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.241 1.241 13 C 0.520 3.480 14 O -0.596 6.596 15 C -0.138 4.138 16 H 0.125 0.875 17 C 0.056 3.944 18 N -0.663 5.663 19 C 0.048 3.952 20 C -0.101 4.101 21 H 0.113 0.887 22 C -0.146 4.146 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.353 0.647 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -8.011 12.093 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.330 5.330 4 C 0.101 3.899 5 C -0.569 4.569 6 H 0.058 0.942 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.164 1.164 13 C 0.310 3.690 14 O -0.477 6.477 15 C -0.161 4.161 16 H 0.142 0.858 17 C -0.075 4.075 18 N -0.290 5.290 19 C -0.081 4.081 20 C -0.122 4.122 21 H 0.131 0.869 22 C -0.204 4.204 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.432 -6.729 12.271 18.070 hybrid contribution 0.318 -0.018 -1.731 1.760 sum -11.114 -6.747 10.540 16.737 Atomic orbital electron populations 1.22195 0.93899 1.03748 1.02083 1.21742 0.95526 0.81404 1.03711 1.48021 1.63764 1.14923 1.06258 1.19281 0.94379 0.93240 0.82950 1.21602 0.95511 1.33095 1.06721 0.94202 1.25774 0.96119 0.96999 0.99643 1.70037 1.14027 1.47191 1.27152 0.85812 0.80514 0.79062 0.78164 1.20538 1.19981 1.16429 1.20827 0.75588 0.86416 0.86203 1.90612 1.50174 1.19118 1.87813 1.22936 1.00557 1.00130 0.92488 0.85751 1.22926 1.00003 0.97841 0.86693 1.63194 1.03627 1.38076 1.24141 1.23091 0.92284 0.98924 0.93840 1.22451 0.92045 1.01712 0.95965 0.86900 1.21871 0.99162 1.00301 0.99083 0.88524 0.92179 0.93392 0.90885 0.89115 0.93826 0.96845 0.92392 0.88311 0.92158 0.82988 0.92582 0.87565 0.91312 0.93842 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.96 71.98 0.72 -2.73 16 2 C 0.10 2.83 5.74 86.38 0.50 3.33 16 3 N -0.60 -24.04 2.04 -826.17 -1.68 -25.72 16 4 C 0.22 11.02 4.25 85.63 0.36 11.39 16 5 C -0.53 -31.03 9.94 25.60 0.25 -30.78 16 6 H 0.04 2.56 6.98 -2.91 -0.02 2.54 16 7 C 0.01 0.75 5.47 84.65 0.46 1.21 16 8 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.94 45.15 27.47 68.60 1.88 47.03 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 13 C 0.52 20.89 4.62 87.66 0.40 21.29 16 14 O -0.60 -30.20 14.49 -3.03 -0.04 -30.24 16 15 C -0.14 -3.80 2.53 -10.64 -0.03 -3.83 16 16 H 0.12 2.55 5.68 -2.38 -0.01 2.53 16 17 C 0.06 1.47 6.96 86.45 0.60 2.07 16 18 N -0.66 -14.49 7.62 -500.87 -3.82 -18.31 16 19 C 0.05 1.13 7.01 86.45 0.61 1.73 16 20 C -0.10 -2.60 3.47 -9.90 -0.03 -2.64 16 21 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 22 C -0.15 -5.27 7.93 71.98 0.57 -4.70 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.21 7.40 -2.39 -0.02 1.19 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 27 H 0.09 2.15 6.44 -2.39 -0.02 2.13 16 28 H 0.04 2.00 7.13 -2.39 -0.02 1.98 16 29 H 0.01 0.72 6.79 -2.39 -0.02 0.71 16 30 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.06 2.11 6.86 -2.39 -0.02 2.09 16 33 H 0.35 5.35 8.92 -89.69 -0.80 4.55 16 34 H 0.06 1.63 7.86 -2.39 -0.02 1.61 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.78 6.33 -2.39 -0.02 1.77 16 38 H 0.02 1.12 6.81 -2.39 -0.02 1.10 16 Total: -1.00 -76.15 296.61 1.25 -74.90 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.19 Total: 15.46 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.42 Total: -3.66 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -5.20 Total: -103.50 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.04 Total: -30.24 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -76.15 1.25 -74.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082559548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.836 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds