Wall clock time and date at job start Mon Mar 30 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46668 * 2 1 4 4 C 1.46500 * 119.99743 * 274.33540 * 3 2 1 5 5 C 1.50701 * 109.47473 * 270.00474 * 4 3 2 6 6 H 1.08006 * 119.99513 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00516 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99668 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00501 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46616 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47380 * 119.99688 * 9 7 5 12 12 H 1.48498 * 109.47147 * 240.00050 * 9 7 5 13 13 C 1.34770 * 120.00203 * 94.34242 * 3 2 1 14 14 O 1.21288 * 120.00029 * 184.66895 * 13 3 2 15 15 C 1.50705 * 120.00159 * 4.66295 * 13 3 2 16 16 H 1.09004 * 110.78343 * 328.16072 * 15 13 3 17 17 C 1.54937 * 110.72348 * 91.41008 * 15 13 3 18 18 N 1.48525 * 103.22603 * 155.77385 * 17 15 13 19 19 C 1.47908 * 105.82356 * 320.79329 * 18 17 15 20 20 C 1.53996 * 107.05570 * 25.32882 * 19 18 17 21 21 H 1.08997 * 110.30939 * 239.76351 * 20 19 18 22 22 C 1.53002 * 110.30670 * 117.68875 * 20 19 18 23 23 H 1.08995 * 109.47002 * 300.00140 * 1 2 3 24 24 H 1.08996 * 109.47263 * 60.00660 * 1 2 3 25 25 H 1.09001 * 109.46766 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47002 * 239.99860 * 2 1 3 27 27 H 1.09005 * 109.47097 * 119.99591 * 2 1 3 28 28 H 1.08999 * 109.47018 * 30.00463 * 4 3 2 29 29 H 1.08995 * 109.47140 * 150.00509 * 4 3 2 30 30 H 0.97005 * 120.00205 * 179.97438 * 8 7 5 31 31 H 1.09002 * 110.66549 * 37.33541 * 17 15 13 32 32 H 1.08998 * 110.81098 * 274.28134 * 17 15 13 33 33 H 1.00896 * 111.00363 * 81.30573 * 18 17 15 34 34 H 1.09003 * 109.91377 * 265.98311 * 19 18 17 35 35 H 1.08999 * 109.91989 * 144.68135 * 19 18 17 36 36 H 1.09004 * 109.46969 * 61.45805 * 22 20 19 37 37 H 1.08997 * 109.47144 * 181.45201 * 22 20 19 38 38 H 1.08994 * 109.47348 * 301.45877 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1719 2.1038 -1.2651 5 6 3.5603 1.8794 -1.8065 6 1 4.2586 1.2607 -1.2622 7 6 3.9396 2.4646 -2.9958 8 7 3.0894 3.2183 -3.6582 9 14 5.6608 2.1870 -3.6665 10 1 6.4173 1.3075 -2.7394 11 1 5.5740 1.5419 -5.0012 12 1 6.3596 3.4913 -3.7915 13 6 2.3262 1.9872 1.1638 14 8 2.6491 3.1563 1.1719 15 6 2.2691 1.2122 2.4550 16 1 1.4923 0.4486 2.4138 17 6 3.6458 0.5772 2.7746 18 7 3.6065 0.4053 4.2494 19 6 2.9365 1.6132 4.7785 20 6 2.0397 2.1618 3.6533 21 1 2.3365 3.1782 3.3946 22 6 0.5713 2.1308 4.0818 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.4383 1.7383 -1.9837 29 1 2.0157 3.1692 -1.0964 30 1 3.3563 3.6304 -4.4949 31 1 4.4551 1.2483 2.4869 32 1 3.7523 -0.3869 2.2776 33 1 3.0997 -0.4295 4.5028 34 1 3.6812 2.3590 5.0568 35 1 2.3279 1.3512 5.6440 36 1 0.4349 2.7654 4.9575 37 1 -0.0528 2.4974 3.2668 38 1 0.2857 1.1078 4.3264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082559549.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:25 Heat of formation + Delta-G solvation = -67.540775 kcal Electronic energy + Delta-G solvation = -18181.543432 eV Core-core repulsion = 15443.393386 eV Total energy + Delta-G solvation = -2738.150046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36418 -38.93928 -36.98915 -34.93006 -32.93070 -31.70188 -31.01675 -28.80335 -26.58239 -25.18126 -24.33168 -22.94726 -21.27480 -19.68901 -18.64980 -18.29093 -17.41359 -17.13635 -16.40546 -16.02730 -15.41279 -14.83654 -14.70639 -14.60525 -14.21511 -14.08317 -13.65754 -13.52658 -13.30076 -13.09247 -13.03058 -12.83094 -12.69467 -12.53395 -12.20402 -11.96796 -11.90195 -11.80221 -11.70418 -11.50653 -10.67574 -10.63380 -9.62838 -9.45735 -8.25048 -6.40343 1.34390 1.37023 1.48884 1.76329 2.26489 2.41713 3.04398 3.21955 3.53856 3.67681 3.97685 4.00859 4.16187 4.24102 4.33950 4.40672 4.48540 4.57737 4.62666 4.78998 4.84992 4.93988 4.95317 4.98007 5.04173 5.11952 5.20253 5.21662 5.33658 5.36809 5.55806 5.65432 5.84380 6.03785 6.51313 6.67876 6.78416 7.25693 7.46313 8.82425 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.006969 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.857904 B = 4016.621661 C = 4368.616034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.601 6.601 15 C -0.132 4.132 16 H 0.124 0.876 17 C 0.064 3.936 18 N -0.667 5.667 19 C 0.054 3.946 20 C -0.117 4.117 21 H 0.056 0.944 22 C -0.134 4.134 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.021 0.979 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.354 0.646 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -10.889 14.905 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.297 3.703 14 O -0.482 6.482 15 C -0.155 4.155 16 H 0.142 0.858 17 C -0.067 4.067 18 N -0.295 5.295 19 C -0.076 4.076 20 C -0.137 4.137 21 H 0.075 0.925 22 C -0.191 4.191 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.218 -10.026 14.895 18.444 hybrid contribution -0.155 0.592 -1.407 1.534 sum -4.373 -9.434 13.488 17.031 Atomic orbital electron populations 1.22151 0.94700 1.03571 1.01498 1.21785 0.95271 0.81425 1.03945 1.48266 1.63274 1.15149 1.06467 1.18686 0.95780 0.91023 0.80532 1.21749 0.99140 1.30828 1.06395 0.92681 1.25889 1.01951 0.94408 0.97000 1.70068 1.37195 1.33051 1.16626 0.85355 0.78848 0.78045 0.78507 1.18931 1.19244 1.20834 1.21038 0.76128 0.86995 0.86186 1.90608 1.50543 1.19473 1.87603 1.23034 1.02118 0.99032 0.91277 0.85770 1.22900 0.93330 1.00882 0.89545 1.62642 1.53989 1.05543 1.07330 1.22804 0.95526 0.92606 0.96663 1.22386 0.98243 0.99175 0.93930 0.92513 1.21795 0.92989 1.03231 1.01112 0.92450 0.94473 0.88304 0.90932 0.87893 0.96116 0.98887 0.92392 0.93082 0.88140 0.82825 0.91720 0.88077 0.90908 0.94436 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.23 71.98 0.74 -3.31 16 2 C 0.10 2.97 5.80 86.38 0.50 3.47 16 3 N -0.60 -25.95 2.46 -826.14 -2.03 -27.98 16 4 C 0.26 14.49 5.22 85.63 0.45 14.94 16 5 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 9 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.51 21.74 6.84 87.66 0.60 22.34 16 14 O -0.60 -32.52 15.19 -3.05 -0.05 -32.56 16 15 C -0.13 -3.79 2.02 -10.33 -0.02 -3.81 16 16 H 0.12 2.74 6.23 -2.38 -0.01 2.72 16 17 C 0.06 1.72 6.90 86.65 0.60 2.32 16 18 N -0.67 -14.13 7.51 -502.20 -3.77 -17.91 16 19 C 0.05 1.14 7.18 86.45 0.62 1.76 16 20 C -0.12 -3.12 3.11 -9.91 -0.03 -3.15 16 21 H 0.06 2.01 6.83 -2.39 -0.02 2.00 16 22 C -0.13 -2.72 8.89 71.98 0.64 -2.08 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 27 H 0.10 2.34 5.81 -2.38 -0.01 2.33 16 28 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 29 H -0.01 -0.45 7.36 -2.39 -0.02 -0.47 16 30 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 31 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 32 H 0.10 2.26 7.90 -2.39 -0.02 2.24 16 33 H 0.35 5.25 8.92 -89.70 -0.80 4.45 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.48 7.68 -2.39 -0.02 1.46 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.18 8.13 -2.39 -0.02 1.16 16 Total: -1.00 -75.99 308.38 1.49 -74.50 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.23 Total: 11.69 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 4.79 Total: 1.70 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -5.52 Total: -102.88 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.99 1.49 -74.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082559549.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.955 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds