Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47214 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47226 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99716 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00241 * 179.97438 * 16 15 14 19 19 C 1.46501 * 120.00154 * 179.97438 * 18 16 15 20 20 C 1.53002 * 117.49725 * 223.62363 * 19 18 16 21 21 C 1.52998 * 117.49510 * 155.00297 * 19 18 16 22 22 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 23 23 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 24 24 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 25 25 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 26 26 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 27 27 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 28 28 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 29 29 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 30 30 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 31 31 H 1.09001 * 109.47423 * 299.99856 * 15 14 13 32 32 H 1.08997 * 109.46936 * 60.00133 * 15 14 13 33 33 H 0.96997 * 119.99583 * 0.02562 * 18 16 15 34 34 H 1.08993 * 115.54737 * 9.33241 * 19 18 16 35 35 H 1.08998 * 117.50164 * 0.02562 * 20 19 18 36 36 H 1.09003 * 117.49612 * 145.02012 * 20 19 18 37 37 H 1.09004 * 117.49417 * 214.97639 * 21 19 18 38 38 H 1.08996 * 117.50235 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6609 0.4202 -4.7694 16 6 3.1652 -0.3244 -5.9788 17 8 3.4439 -1.5017 -5.8934 18 7 3.3055 0.3178 -7.1554 19 6 3.7962 -0.4059 -8.3309 20 6 4.8406 0.2917 -9.2048 21 6 3.4041 0.1344 -9.7075 22 1 -0.3633 0.4033 0.9453 23 1 -0.3634 0.6170 -0.8219 24 1 -0.3633 -1.0202 -0.1234 25 1 1.9017 -1.9132 3.4364 26 1 1.4495 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 1.6658 0.8147 -4.9750 32 1 3.3379 1.2432 -4.5406 33 1 3.0823 1.2592 -7.2237 34 1 3.8749 -1.4871 -8.2182 35 1 5.1628 1.2888 -8.9049 36 1 5.6067 -0.3307 -9.6672 37 1 3.2252 -0.5916 -10.5007 38 1 2.7807 1.0279 -9.7387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082666488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = -25.612895 kcal Electronic energy + Delta-G solvation = -16564.709927 eV Core-core repulsion = 13828.378010 eV Total energy + Delta-G solvation = -2736.331917 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99795 -37.48557 -36.47891 -33.75267 -33.03256 -31.85403 -29.04518 -25.65691 -24.58761 -22.80702 -22.39298 -21.19418 -20.55779 -19.78991 -17.49720 -17.14985 -16.74425 -15.91071 -14.93494 -14.80180 -14.30811 -14.15231 -13.67808 -13.40736 -13.03860 -12.81580 -12.26639 -12.01920 -11.91723 -11.83657 -11.60089 -11.30748 -11.19922 -10.93184 -10.73728 -10.52894 -10.36993 -10.02901 -9.95452 -9.69756 -9.05444 -8.98765 -8.11774 -7.36612 -6.37732 -3.93594 2.43881 2.82040 3.41347 3.46711 3.53344 3.64056 4.37657 4.53514 4.55984 4.57565 4.59920 4.84499 5.07749 5.19761 5.27483 5.37014 5.39988 5.51290 5.64454 5.67322 5.73706 5.85484 6.02543 6.20811 6.30541 6.40459 6.47391 6.58368 6.68296 6.90775 7.22678 7.24555 7.87953 8.05268 8.35388 8.43556 8.53026 9.10154 9.70780 10.99189 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059234 B = 0.003417 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.591671 B = 8192.950907 C = 8332.064547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.189 3.811 3 H 0.024 0.976 4 C -0.589 4.589 5 H 0.063 0.937 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 1.037 2.963 9 H -0.286 1.286 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.676 5.676 13 C 0.057 3.943 14 C -0.101 4.101 15 C -0.137 4.137 16 C 0.517 3.483 17 O -0.533 6.533 18 N -0.710 5.710 19 C 0.080 3.920 20 C -0.195 4.195 21 C -0.191 4.191 22 H 0.056 0.944 23 H 0.018 0.982 24 H 0.043 0.957 25 H 0.269 0.731 26 H 0.329 0.671 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 6.572 -24.603 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.080 3.920 3 H 0.042 0.958 4 C -0.627 4.627 5 H 0.082 0.918 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.865 3.135 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.305 5.305 13 C -0.073 4.073 14 C -0.140 4.140 15 C -0.178 4.178 16 C 0.305 3.695 17 O -0.408 6.408 18 N -0.361 5.361 19 C -0.026 4.026 20 C -0.234 4.234 21 C -0.230 4.230 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.714 6.970 -23.188 24.274 hybrid contribution -0.819 -0.491 -1.546 1.817 sum 0.895 6.480 -24.734 25.584 Atomic orbital electron populations 1.22829 1.01252 0.99710 0.99765 1.19487 0.88911 0.94406 0.89165 0.95778 1.21936 1.39545 1.10948 0.90247 0.91849 1.25653 0.93860 1.05639 0.92180 1.70840 1.44680 1.06300 1.31901 0.84147 0.76921 0.76423 0.75962 1.21133 1.21049 1.20676 1.60691 1.58040 1.08854 1.02913 1.21966 0.98175 0.96147 0.91043 1.21336 1.03561 0.97271 0.91808 1.21676 1.02819 1.00141 0.93160 1.20951 0.76814 0.87733 0.84023 1.90716 1.49271 1.16214 1.84609 1.45490 1.67839 1.13648 1.09090 1.21596 1.01040 0.97502 0.82469 1.23425 0.92863 1.02891 1.04189 1.23373 0.98250 1.03843 0.97503 0.92533 0.96267 0.93755 0.92138 0.85403 0.96495 0.91711 0.90403 0.91652 0.88973 0.88662 0.76447 0.84516 0.88490 0.88008 0.87919 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.90 37.16 0.33 -3.59 16 2 C 0.19 4.60 2.17 -68.87 -0.15 4.45 16 3 H 0.02 0.60 6.37 -51.93 -0.33 0.27 16 4 C -0.59 -17.02 9.05 -34.44 -0.31 -17.33 16 5 H 0.06 2.01 8.06 -52.49 -0.42 1.59 16 6 C 0.03 0.94 5.19 -17.82 -0.09 0.84 16 7 N -0.90 -28.12 13.70 55.43 0.76 -27.36 16 8 Si 1.04 25.36 26.44 -169.99 -4.50 20.87 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.35 6.15 56.52 0.35 -6.00 16 12 N -0.68 -14.44 6.23 -107.95 -0.67 -15.12 16 13 C 0.06 0.96 5.48 -3.82 -0.02 0.93 16 14 C -0.10 -1.48 4.76 -26.74 -0.13 -1.61 16 15 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 16 C 0.52 6.23 7.83 -10.98 -0.09 6.15 16 17 O -0.53 -8.75 15.55 5.55 0.09 -8.66 16 18 N -0.71 -6.20 5.57 -53.81 -0.30 -6.50 16 19 C 0.08 0.68 6.43 -67.93 -0.44 0.25 16 20 C -0.19 -1.26 10.46 -26.73 -0.28 -1.54 16 21 C -0.19 -1.15 10.45 -26.73 -0.28 -1.43 16 22 H 0.06 1.32 5.48 -51.93 -0.28 1.03 16 23 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 24 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 25 H 0.27 8.35 8.73 -40.82 -0.36 8.00 16 26 H 0.33 6.77 8.38 -39.29 -0.33 6.44 16 27 H 0.02 0.27 7.58 -51.93 -0.39 -0.12 16 28 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.06 1.00 8.10 -51.92 -0.42 0.58 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 2.31 8.83 -40.82 -0.36 1.95 16 34 H 0.14 1.40 7.40 -51.93 -0.38 1.02 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -33.49 313.84 -7.82 -41.32 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.32 Total: 5.22 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.61 Total: -14.49 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.21 Total: -48.98 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.50 Total: 20.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.49 -7.82 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.705 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds