Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47214 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47226 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99716 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00241 * 179.97438 * 16 15 14 19 19 C 1.46501 * 120.00154 * 179.97438 * 18 16 15 20 20 C 1.53002 * 117.49725 * 223.62363 * 19 18 16 21 21 C 1.52998 * 117.49510 * 155.00297 * 19 18 16 22 22 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 23 23 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 24 24 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 25 25 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 26 26 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 27 27 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 28 28 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 29 29 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 30 30 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 31 31 H 1.09001 * 109.47423 * 299.99856 * 15 14 13 32 32 H 1.08997 * 109.46936 * 60.00133 * 15 14 13 33 33 H 0.96997 * 119.99583 * 0.02562 * 18 16 15 34 34 H 1.08993 * 115.54737 * 9.33241 * 19 18 16 35 35 H 1.08998 * 117.50164 * 0.02562 * 20 19 18 36 36 H 1.09003 * 117.49612 * 145.02012 * 20 19 18 37 37 H 1.09004 * 117.49417 * 214.97639 * 21 19 18 38 38 H 1.08996 * 117.50235 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6609 0.4202 -4.7694 16 6 3.1652 -0.3244 -5.9788 17 8 3.4439 -1.5017 -5.8934 18 7 3.3055 0.3178 -7.1554 19 6 3.7962 -0.4059 -8.3309 20 6 4.8406 0.2917 -9.2048 21 6 3.4041 0.1344 -9.7075 22 1 -0.3633 0.4033 0.9453 23 1 -0.3634 0.6170 -0.8219 24 1 -0.3633 -1.0202 -0.1234 25 1 1.9017 -1.9132 3.4364 26 1 1.4495 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 1.6658 0.8147 -4.9750 32 1 3.3379 1.2432 -4.5406 33 1 3.0823 1.2592 -7.2237 34 1 3.8749 -1.4871 -8.2182 35 1 5.1628 1.2888 -8.9049 36 1 5.6067 -0.3307 -9.6672 37 1 3.2252 -0.5916 -10.5007 38 1 2.7807 1.0279 -9.7387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082666488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = -51.362528 kcal Electronic energy + Delta-G solvation = -16565.826515 eV Core-core repulsion = 13828.378010 eV Total energy + Delta-G solvation = -2737.448504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88028 -38.37242 -37.93079 -35.33311 -34.07277 -33.50605 -30.59736 -27.04776 -26.54751 -23.35981 -23.27188 -22.19342 -21.87268 -21.33146 -19.54723 -18.16308 -17.45487 -16.95074 -16.30284 -16.00545 -15.56868 -15.44905 -15.11541 -14.85826 -14.35652 -13.92531 -13.69944 -13.63670 -13.28480 -12.94016 -12.53840 -12.49580 -12.34462 -12.32232 -12.19073 -11.85123 -11.73365 -11.57356 -11.48615 -11.13270 -10.92685 -10.34994 -9.75299 -9.07151 -8.66222 -6.27302 1.47568 1.55781 1.56284 1.75104 2.08714 2.53704 2.97864 3.04868 3.50737 3.72771 3.82092 4.03782 4.06410 4.07910 4.24384 4.46818 4.49966 4.59901 4.69949 4.74118 4.75345 4.77253 4.83680 4.88715 5.01925 5.07590 5.19684 5.23511 5.36855 5.47077 5.53130 5.91646 6.11017 6.46226 6.51980 6.75203 6.79698 7.24780 7.48353 8.64929 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059234 B = 0.003417 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.591671 B = 8192.950907 C = 8332.064547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.032 0.968 4 C -0.599 4.599 5 H 0.015 0.985 6 C -0.021 4.021 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.289 1.289 10 H -0.266 1.266 11 H -0.244 1.244 12 N -0.698 5.698 13 C 0.060 3.940 14 C -0.093 4.093 15 C -0.127 4.127 16 C 0.513 3.487 17 O -0.589 6.589 18 N -0.692 5.692 19 C 0.046 3.954 20 C -0.186 4.186 21 C -0.170 4.170 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.251 0.749 26 H 0.330 0.670 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.419 0.581 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 9.980 -27.064 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.082 3.918 3 H 0.050 0.950 4 C -0.637 4.637 5 H 0.033 0.967 6 C -0.219 4.219 7 N -0.572 5.572 8 Si 0.903 3.097 9 H -0.216 1.216 10 H -0.191 1.191 11 H -0.168 1.168 12 N -0.328 5.328 13 C -0.069 4.069 14 C -0.131 4.131 15 C -0.167 4.167 16 C 0.301 3.699 17 O -0.469 6.469 18 N -0.343 5.343 19 C -0.060 4.060 20 C -0.224 4.224 21 C -0.208 4.208 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.147 0.853 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.256 0.744 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.715 10.409 -25.721 27.757 hybrid contribution -0.433 -1.655 -0.874 1.921 sum 0.282 8.753 -26.595 28.000 Atomic orbital electron populations 1.22668 0.99271 1.00278 1.00645 1.19312 0.90237 0.93975 0.88308 0.95020 1.22178 1.38919 1.09500 0.93058 0.96709 1.27216 0.93073 1.09761 0.91811 1.70976 1.47620 1.05510 1.33074 0.83582 0.78935 0.70741 0.76397 1.21555 1.19079 1.16849 1.60525 1.58320 1.09917 1.04017 1.22024 0.99592 0.95456 0.89809 1.21165 1.01415 0.97722 0.92837 1.21605 1.05190 0.99287 0.90602 1.21224 0.76309 0.87119 0.85206 1.90701 1.52050 1.18628 1.85519 1.45307 1.66425 1.14342 1.08208 1.21616 1.04131 0.96645 0.83595 1.23494 0.93194 1.02995 1.02745 1.23457 0.97916 1.04104 0.95364 0.93671 0.92455 0.94227 0.93999 0.85327 0.94188 0.91249 0.93227 0.92898 0.85869 0.86197 0.74379 0.87186 0.87438 0.87643 0.87147 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.08 8.90 71.98 0.64 -6.44 16 2 C 0.19 9.02 2.17 44.17 0.10 9.12 16 3 H 0.03 1.47 6.37 -2.38 -0.02 1.45 16 4 C -0.60 -35.32 9.05 25.60 0.23 -35.09 16 5 H 0.01 0.98 8.06 -2.91 -0.02 0.95 16 6 C -0.02 -1.21 5.19 84.66 0.44 -0.77 16 7 N -0.94 -60.06 13.70 21.45 0.29 -59.77 16 8 Si 1.08 49.83 26.44 68.60 1.81 51.65 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.24 -9.82 6.15 99.48 0.61 -9.20 16 12 N -0.70 -29.37 6.23 -495.45 -3.09 -32.46 16 13 C 0.06 1.88 5.48 86.30 0.47 2.35 16 14 C -0.09 -2.61 4.76 30.59 0.15 -2.46 16 15 C -0.13 -2.33 5.70 29.85 0.17 -2.16 16 16 C 0.51 11.76 7.83 87.66 0.69 12.45 16 17 O -0.59 -19.84 15.55 -3.04 -0.05 -19.89 16 18 N -0.69 -10.68 5.57 -442.53 -2.46 -13.15 16 19 C 0.05 0.73 6.43 44.99 0.29 1.02 16 20 C -0.19 -1.99 10.46 30.60 0.32 -1.67 16 21 C -0.17 -1.59 10.45 30.59 0.32 -1.27 16 22 H 0.04 1.97 5.48 -2.39 -0.01 1.96 16 23 H 0.06 1.95 7.64 -2.38 -0.02 1.93 16 24 H 0.04 1.65 8.00 -2.39 -0.02 1.63 16 25 H 0.25 16.46 8.73 -92.71 -0.81 15.66 16 26 H 0.33 13.58 8.38 -89.69 -0.75 12.83 16 27 H 0.04 1.09 7.58 -2.39 -0.02 1.07 16 28 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 29 H 0.05 1.66 8.10 -2.38 -0.02 1.64 16 30 H 0.05 1.60 8.10 -2.38 -0.02 1.58 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.42 3.39 8.83 -92.71 -0.82 2.57 16 34 H 0.11 2.35 7.40 -2.39 -0.02 2.34 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.43 313.84 -0.33 -76.76 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.65 Total: 21.78 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 3.81 Total: -24.93 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.26 Total: -105.37 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.81 Total: 51.65 kcal Total: -76.43 -0.33 -76.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.399 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds