Wall clock time and date at job start Mon Mar 30 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47165 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00041 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99793 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99361 * 180.02562 * 18 16 15 20 20 C 1.53005 * 117.49581 * 223.61966 * 19 18 16 21 21 C 1.52999 * 60.00241 * 252.51359 * 20 19 18 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 1.09002 * 109.47487 * 300.00403 * 15 14 13 32 32 H 1.09001 * 109.46695 * 60.00322 * 15 14 13 33 33 H 0.96991 * 120.00266 * 0.02562 * 18 16 15 34 34 H 1.08998 * 115.55524 * 9.33233 * 19 18 16 35 35 H 1.08999 * 117.49821 * 0.02562 * 20 19 18 36 36 H 1.09003 * 117.49839 * 145.02651 * 20 19 18 37 37 H 1.08998 * 117.50327 * 252.51123 * 21 20 19 38 38 H 1.09009 * 117.51583 * 107.48012 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.1652 -0.3242 5.9788 17 8 3.4448 -1.5013 5.8932 18 7 3.3054 0.3181 7.1554 19 6 3.7962 -0.4057 8.3308 20 6 3.0813 -0.1598 9.6611 21 6 4.4815 0.4113 9.4281 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 1.4496 -1.4978 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 3.3378 1.2435 4.5407 32 1 1.6657 0.8146 4.9749 33 1 3.0815 1.2593 7.2239 34 1 4.1745 -1.4100 8.1405 35 1 2.2457 0.5401 9.6615 36 1 2.9891 -1.0025 10.3462 37 1 5.3105 -0.0558 9.9598 38 1 4.5676 1.4872 9.2752 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082666489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:01 Heat of formation + Delta-G solvation = -26.188412 kcal Electronic energy + Delta-G solvation = -16508.776868 eV Core-core repulsion = 13772.419995 eV Total energy + Delta-G solvation = -2736.356873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.94177 -37.43146 -36.27539 -33.68175 -32.98738 -31.65611 -28.50842 -25.43484 -24.99241 -22.77333 -22.34037 -21.11224 -20.48354 -20.03675 -17.24977 -16.69842 -16.16658 -15.81634 -14.89973 -14.68296 -14.56225 -14.16528 -13.46380 -13.35598 -13.01416 -12.61020 -11.98687 -11.94885 -11.81376 -11.56136 -11.44497 -11.08493 -10.89431 -10.86151 -10.73951 -10.58968 -10.24718 -10.07528 -9.96803 -9.72311 -9.00824 -8.95764 -8.31622 -7.15906 -5.94195 -3.97098 2.49449 2.87457 3.38298 3.41402 3.45673 3.57037 4.41355 4.47874 4.57624 4.61929 4.66169 4.98087 5.16572 5.23083 5.37211 5.41935 5.51251 5.58314 5.67730 5.79263 5.85380 6.01386 6.17160 6.26504 6.56055 6.68986 6.73367 6.88783 7.14634 7.28057 7.42805 7.78282 7.93983 8.10777 8.33089 8.60888 8.68734 9.10367 9.68128 11.12917 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.066596 B = 0.003224 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.346316 B = 8681.510426 C = 8865.672189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.061 3.939 14 C -0.101 4.101 15 C -0.138 4.138 16 C 0.517 3.483 17 O -0.533 6.533 18 N -0.710 5.710 19 C 0.081 3.919 20 C -0.196 4.196 21 C -0.191 4.191 22 H 0.027 0.973 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.325 0.675 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 2.545 21.657 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.069 4.069 14 C -0.139 4.139 15 C -0.178 4.178 16 C 0.305 3.695 17 O -0.409 6.409 18 N -0.361 5.361 19 C -0.026 4.026 20 C -0.234 4.234 21 C -0.230 4.230 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.142 0.858 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.701 1.883 21.231 21.633 hybrid contribution -0.862 0.319 -0.464 1.029 sum 2.840 2.202 20.766 21.075 Atomic orbital electron populations 1.22433 1.00797 0.99194 1.00405 1.19167 0.89542 0.94374 0.86608 0.94958 1.21162 1.30098 1.12419 0.89672 0.91967 1.24960 0.95376 0.95240 0.99043 1.69878 1.37418 1.23287 1.23374 0.86557 0.79192 0.79614 0.81989 1.21501 1.20285 1.20368 1.60765 1.58151 1.09106 1.03483 1.21889 0.98132 0.96047 0.90882 1.21347 1.03412 0.97254 0.91930 1.21682 1.02811 1.00168 0.93142 1.20980 0.76775 0.87719 0.84007 1.90709 1.49249 1.16220 1.84702 1.45497 1.67900 1.13614 1.09079 1.21596 1.01669 0.98138 0.81172 1.23423 0.95761 1.04055 1.00195 1.23374 0.96396 1.00398 1.02798 0.95346 0.97680 0.89290 0.93075 0.85816 0.91853 0.96555 0.91749 0.90538 0.88673 0.88982 0.76442 0.84517 0.88526 0.88054 0.87926 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 2 C 0.21 5.42 2.57 -68.87 -0.18 5.24 16 3 H 0.03 0.90 7.80 -51.92 -0.40 0.50 16 4 C -0.49 -14.05 8.84 -34.44 -0.30 -14.35 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.69 -15.06 6.23 -107.95 -0.67 -15.74 16 13 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 14 C -0.10 -1.53 4.76 -26.73 -0.13 -1.66 16 15 C -0.14 -1.54 5.70 -27.89 -0.16 -1.70 16 16 C 0.52 6.43 7.83 -10.98 -0.09 6.35 16 17 O -0.53 -8.91 15.55 5.55 0.09 -8.82 16 18 N -0.71 -6.45 5.57 -53.80 -0.30 -6.75 16 19 C 0.08 0.71 6.43 -67.92 -0.44 0.27 16 20 C -0.20 -1.30 10.46 -26.73 -0.28 -1.58 16 21 C -0.19 -1.20 10.46 -26.73 -0.28 -1.48 16 22 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.33 6.86 8.47 -39.30 -0.33 6.53 16 27 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 28 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 29 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.08 1.29 8.10 -51.92 -0.42 0.87 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 34 H 0.14 1.43 7.40 -51.93 -0.38 1.05 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -32.01 317.11 -8.47 -40.48 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.33 Total: 4.88 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.63 Total: -10.23 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.34 Total: -47.97 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.01 -8.47 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.291 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds