Wall clock time and date at job start Mon Mar 30 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47165 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00041 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99793 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99361 * 180.02562 * 18 16 15 20 20 C 1.53005 * 117.49581 * 223.61966 * 19 18 16 21 21 C 1.52999 * 60.00241 * 252.51359 * 20 19 18 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 1.09002 * 109.47487 * 300.00403 * 15 14 13 32 32 H 1.09001 * 109.46695 * 60.00322 * 15 14 13 33 33 H 0.96991 * 120.00266 * 0.02562 * 18 16 15 34 34 H 1.08998 * 115.55524 * 9.33233 * 19 18 16 35 35 H 1.08999 * 117.49821 * 0.02562 * 20 19 18 36 36 H 1.09003 * 117.49839 * 145.02651 * 20 19 18 37 37 H 1.08998 * 117.50327 * 252.51123 * 21 20 19 38 38 H 1.09009 * 117.51583 * 107.48012 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.1652 -0.3242 5.9788 17 8 3.4448 -1.5013 5.8932 18 7 3.3054 0.3181 7.1554 19 6 3.7962 -0.4057 8.3308 20 6 3.0813 -0.1598 9.6611 21 6 4.4815 0.4113 9.4281 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 1.4496 -1.4978 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 3.3378 1.2435 4.5407 32 1 1.6657 0.8146 4.9749 33 1 3.0815 1.2593 7.2239 34 1 4.1745 -1.4100 8.1405 35 1 2.2457 0.5401 9.6615 36 1 2.9891 -1.0025 10.3462 37 1 5.3105 -0.0558 9.9598 38 1 4.5676 1.4872 9.2752 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082666489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:01 Heat of formation + Delta-G solvation = -48.956350 kcal Electronic energy + Delta-G solvation = -16509.764160 eV Core-core repulsion = 13772.419995 eV Total energy + Delta-G solvation = -2737.344165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86165 -38.29998 -37.85832 -35.30876 -33.99023 -33.28815 -30.17490 -27.26046 -26.67974 -23.36198 -23.26108 -22.16326 -22.10971 -21.35820 -18.44688 -18.01086 -17.43796 -16.92438 -16.72087 -16.00082 -15.51903 -15.35908 -15.11534 -14.76819 -14.21501 -13.72736 -13.59880 -13.27559 -13.16593 -12.79983 -12.70557 -12.48049 -12.34471 -12.31499 -12.27505 -12.14800 -11.77750 -11.61885 -11.47138 -11.06048 -10.87296 -10.47404 -9.73757 -8.92891 -8.09009 -6.20074 1.43704 1.45567 1.53440 1.57620 2.10069 2.45197 2.99150 3.18873 3.61198 3.75215 3.83380 4.05454 4.07402 4.10663 4.30555 4.52229 4.62263 4.70223 4.76316 4.76752 4.83355 4.89220 4.91837 5.03145 5.10589 5.20877 5.25960 5.35313 5.47141 5.54667 5.70603 5.84296 6.29288 6.52959 6.68011 6.85654 6.95437 7.25688 7.49930 8.96280 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.066596 B = 0.003224 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.346316 B = 8681.510426 C = 8865.672189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.272 1.272 12 N -0.696 5.696 13 C 0.064 3.936 14 C -0.090 4.090 15 C -0.128 4.128 16 C 0.515 3.485 17 O -0.587 6.587 18 N -0.692 5.692 19 C 0.046 3.954 20 C -0.184 4.184 21 C -0.172 4.172 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.262 0.738 26 H 0.330 0.670 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 3.414 22.931 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.198 1.198 12 N -0.326 5.326 13 C -0.065 4.065 14 C -0.128 4.128 15 C -0.169 4.169 16 C 0.303 3.697 17 O -0.466 6.466 18 N -0.343 5.343 19 C -0.060 4.060 20 C -0.223 4.223 21 C -0.210 4.210 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.641 2.794 22.554 23.017 hybrid contribution -0.829 0.076 -0.771 1.134 sum 2.812 2.870 21.784 22.151 Atomic orbital electron populations 1.22240 0.99909 0.99195 1.00244 1.18941 0.90120 0.92772 0.87509 0.97710 1.21471 1.30524 1.12525 0.91328 0.93024 1.25716 0.95456 0.95913 1.01842 1.69995 1.37949 1.24208 1.24073 0.85576 0.78635 0.78667 0.78503 1.20746 1.19971 1.19773 1.60638 1.58065 1.09884 1.04023 1.21925 0.98817 0.95499 0.90279 1.21149 1.01602 0.97590 0.92470 1.21605 1.04964 0.99396 0.90889 1.21150 0.76314 0.87094 0.85103 1.90693 1.51912 1.18459 1.85571 1.45312 1.66488 1.14286 1.08253 1.21629 1.04481 0.97958 0.81891 1.23492 0.96401 1.04335 0.98033 1.23461 0.96472 1.00865 1.00231 0.95151 0.95270 0.91884 0.92938 0.85330 0.92093 0.95376 0.92682 0.92741 0.86418 0.86278 0.74462 0.87042 0.87474 0.87517 0.87116 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.94 71.98 0.64 -6.98 16 2 C 0.22 11.15 2.57 44.17 0.11 11.27 16 3 H 0.00 0.28 7.80 -2.38 -0.02 0.26 16 4 C -0.52 -29.82 8.84 25.60 0.23 -29.59 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.50 5.30 84.66 0.45 0.95 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.70 -30.63 6.23 -495.44 -3.09 -33.72 16 13 C 0.06 2.23 5.48 86.30 0.47 2.70 16 14 C -0.09 -2.66 4.76 30.59 0.15 -2.52 16 15 C -0.13 -2.62 5.70 29.85 0.17 -2.45 16 16 C 0.51 12.35 7.83 87.66 0.69 13.04 16 17 O -0.59 -20.00 15.55 -3.05 -0.05 -20.05 16 18 N -0.69 -11.41 5.57 -442.51 -2.46 -13.87 16 19 C 0.05 0.77 6.43 45.00 0.29 1.06 16 20 C -0.18 -2.04 10.46 30.60 0.32 -1.72 16 21 C -0.17 -1.74 10.46 30.60 0.32 -1.42 16 22 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 23 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 24 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.33 13.90 8.47 -89.70 -0.76 13.14 16 27 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16 28 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 29 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.05 1.85 8.10 -2.38 -0.02 1.84 16 31 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 3.95 8.83 -92.71 -0.82 3.14 16 34 H 0.11 2.42 7.40 -2.39 -0.02 2.41 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -69.89 317.11 -0.02 -69.92 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.53 Total: 20.02 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 3.84 Total: -15.68 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.31 Total: -101.11 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.89 -0.02 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds