Wall clock time and date at job start Mon Mar 30 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47204 * 179.97438 * 15 13 12 17 17 N 1.46897 * 110.01279 * 58.61091 * 16 15 13 18 18 C 1.54257 * 110.03348 * 297.16777 * 16 15 13 19 19 C 1.54893 * 104.19553 * 217.10533 * 18 16 15 20 20 C 1.54884 * 102.74883 * 37.94283 * 19 18 16 21 21 C 1.53879 * 110.03131 * 179.97438 * 16 15 13 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 27 27 H 1.09004 * 109.47206 * 300.00334 * 15 13 12 28 28 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 29 29 H 1.00893 * 111.00421 * 300.69726 * 17 16 15 30 30 H 1.00899 * 111.00143 * 64.65803 * 17 16 15 31 31 H 1.08996 * 110.49005 * 335.77865 * 18 16 15 32 32 H 1.09003 * 110.48858 * 98.42688 * 18 16 15 33 33 H 1.09007 * 110.75319 * 279.62754 * 19 18 16 34 34 H 1.09000 * 110.75862 * 156.26310 * 19 18 16 35 35 H 1.09006 * 110.48566 * 203.38134 * 20 19 18 36 36 H 1.08997 * 110.48891 * 80.73718 * 20 19 18 37 37 H 1.09001 * 110.03026 * 238.56904 * 21 16 15 38 38 H 1.08997 * 110.03233 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 6 2.7009 0.2546 4.7588 17 7 1.3659 0.8169 5.0030 18 6 3.7044 1.3860 4.4546 19 6 4.3743 1.6770 5.8204 20 6 4.5083 0.2652 6.4431 21 6 3.2114 -0.4582 6.0233 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 2.2490 -1.6317 1.1527 27 1 1.9759 -1.5505 3.8326 28 1 3.6480 -1.1213 3.3986 29 1 1.0211 1.2978 4.1858 30 1 0.7206 0.1004 5.3000 31 1 4.4464 1.0529 3.7291 32 1 3.1827 2.2707 4.0893 33 1 3.7368 2.3118 6.4359 34 1 5.3548 2.1323 5.6806 35 1 4.5732 0.3319 7.5292 36 1 5.3801 -0.2490 6.0387 37 1 2.4691 -0.3858 6.8182 38 1 3.4216 -1.5048 5.8028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082772451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:31 Heat of formation + Delta-G solvation = -60.601671 kcal Electronic energy + Delta-G solvation = -17848.559528 eV Core-core repulsion = 15110.710384 eV Total energy + Delta-G solvation = -2737.849144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77440 -37.73843 -34.83695 -32.66118 -32.43481 -29.82942 -28.59047 -28.09284 -25.33685 -25.04763 -21.26991 -20.66798 -19.47588 -18.89482 -17.17514 -15.96862 -15.58280 -15.08742 -14.91360 -14.78691 -14.57746 -14.06248 -13.34992 -13.04434 -12.73344 -12.46912 -12.21457 -11.61402 -11.31895 -11.14992 -11.03154 -10.98744 -10.93891 -10.72604 -10.71389 -10.57123 -10.42002 -10.31229 -10.27264 -9.07784 -9.00901 -8.59724 -8.33309 -7.93546 -6.15386 -4.24842 3.21260 3.29058 3.31442 3.34779 4.05990 4.35009 4.66882 4.74344 4.83218 5.13032 5.16963 5.28479 5.41600 5.49960 5.63723 5.75829 5.78953 5.81994 5.93836 6.00871 6.15535 6.21425 6.29869 6.51199 6.59735 6.78227 6.91668 7.11378 7.40320 7.52114 7.58715 7.66229 7.87003 7.91827 8.12352 8.63371 8.75124 9.10202 9.43112 10.90554 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045333 B = 0.005121 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.498171 B = 5466.339305 C = 5626.496573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.709 5.709 13 C 0.500 3.500 14 O -0.552 6.552 15 C -0.175 4.175 16 C 0.137 3.863 17 N -0.840 5.840 18 C -0.102 4.102 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.115 4.115 22 H 0.025 0.975 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.264 0.736 26 H 0.388 0.612 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.362 0.638 30 H 0.326 0.674 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -4.055 13.869 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.356 5.356 13 C 0.285 3.715 14 O -0.432 6.432 15 C -0.217 4.217 16 C 0.043 3.957 17 N -0.376 5.376 18 C -0.140 4.140 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.154 4.154 22 H 0.044 0.956 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.220 0.780 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.182 0.818 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.349 -2.628 14.250 15.129 hybrid contribution 0.062 -1.748 -1.793 2.505 sum 4.411 -4.376 12.457 13.920 Atomic orbital electron populations 1.22068 0.98502 0.98993 1.00874 1.18740 0.90973 0.94002 0.80138 0.93362 1.21256 1.32417 1.13207 0.90387 0.92117 1.24892 0.94787 0.94946 0.99084 1.69907 1.35870 1.22475 1.23801 0.86397 0.78620 0.79531 0.82572 1.19763 1.20848 1.20829 1.46588 1.64740 1.13491 1.10754 1.20484 0.78574 0.87585 0.84822 1.90539 1.51787 1.15975 1.84877 1.22711 1.03035 1.00262 0.95713 1.21104 0.91150 0.92357 0.91112 1.59171 1.03103 1.31849 1.43443 1.22323 0.96664 0.98949 0.96087 1.22470 0.99878 0.96471 0.97062 1.22311 0.97239 0.96440 0.99895 1.22282 0.97556 0.98416 0.97100 0.95606 0.89150 0.96728 0.92605 0.78024 0.89937 0.89251 0.81760 0.86243 0.92165 0.90070 0.91324 0.92256 0.92083 0.92019 0.90988 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.64 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -14.46 5.07 -54.94 -0.28 -14.74 16 13 C 0.50 9.48 7.33 -10.99 -0.08 9.40 16 14 O -0.55 -12.15 12.03 5.56 0.07 -12.09 16 15 C -0.17 -2.45 4.58 -27.88 -0.13 -2.58 16 16 C 0.14 1.87 0.81 -130.49 -0.11 1.76 16 17 N -0.84 -12.22 8.71 1.64 0.01 -12.20 16 18 C -0.10 -1.51 4.89 -25.07 -0.12 -1.63 16 19 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 20 C -0.12 -1.27 6.83 -25.05 -0.17 -1.44 16 21 C -0.12 -1.28 6.21 -25.58 -0.16 -1.44 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.14 8.12 -51.92 -0.42 0.71 16 29 H 0.36 6.24 6.23 -39.30 -0.24 6.00 16 30 H 0.33 4.16 9.00 -39.29 -0.35 3.81 16 31 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 32 H 0.08 1.41 7.34 -51.93 -0.38 1.03 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 38 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -28.79 300.72 -7.40 -36.19 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.17 Total: 14.07 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.17 Total: -7.12 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.36 Total: -51.16 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.79 -7.40 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082772451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.410 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds