Wall clock time and date at job start Mon Mar 30 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47204 * 179.97438 * 15 13 12 17 17 N 1.46897 * 110.01279 * 58.61091 * 16 15 13 18 18 C 1.54257 * 110.03348 * 297.16777 * 16 15 13 19 19 C 1.54893 * 104.19553 * 217.10533 * 18 16 15 20 20 C 1.54884 * 102.74883 * 37.94283 * 19 18 16 21 21 C 1.53879 * 110.03131 * 179.97438 * 16 15 13 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 27 27 H 1.09004 * 109.47206 * 300.00334 * 15 13 12 28 28 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 29 29 H 1.00893 * 111.00421 * 300.69726 * 17 16 15 30 30 H 1.00899 * 111.00143 * 64.65803 * 17 16 15 31 31 H 1.08996 * 110.49005 * 335.77865 * 18 16 15 32 32 H 1.09003 * 110.48858 * 98.42688 * 18 16 15 33 33 H 1.09007 * 110.75319 * 279.62754 * 19 18 16 34 34 H 1.09000 * 110.75862 * 156.26310 * 19 18 16 35 35 H 1.09006 * 110.48566 * 203.38134 * 20 19 18 36 36 H 1.08997 * 110.48891 * 80.73718 * 20 19 18 37 37 H 1.09001 * 110.03026 * 238.56904 * 21 16 15 38 38 H 1.08997 * 110.03233 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 6 2.7009 0.2546 4.7588 17 7 1.3659 0.8169 5.0030 18 6 3.7044 1.3860 4.4546 19 6 4.3743 1.6770 5.8204 20 6 4.5083 0.2652 6.4431 21 6 3.2114 -0.4582 6.0233 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 2.2490 -1.6317 1.1527 27 1 1.9759 -1.5505 3.8326 28 1 3.6480 -1.1213 3.3986 29 1 1.0211 1.2978 4.1858 30 1 0.7206 0.1004 5.3000 31 1 4.4464 1.0529 3.7291 32 1 3.1827 2.2707 4.0893 33 1 3.7368 2.3118 6.4359 34 1 5.3548 2.1323 5.6806 35 1 4.5732 0.3319 7.5292 36 1 5.3801 -0.2490 6.0387 37 1 2.4691 -0.3858 6.8182 38 1 3.4216 -1.5048 5.8028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082772451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:31 Heat of formation + Delta-G solvation = -80.881555 kcal Electronic energy + Delta-G solvation = -17849.438930 eV Core-core repulsion = 15110.710384 eV Total energy + Delta-G solvation = -2738.728546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14248 -39.04105 -36.66842 -34.33864 -33.75490 -31.47987 -29.60539 -29.53300 -27.36907 -26.22424 -23.06519 -21.62657 -21.16859 -20.01385 -18.87044 -17.56525 -17.21588 -16.63624 -16.19838 -15.98999 -15.81670 -15.55680 -14.59940 -14.54035 -14.34273 -13.87546 -13.80625 -13.27881 -13.01554 -12.83885 -12.66939 -12.33688 -12.30325 -12.14997 -11.97628 -11.88961 -11.76212 -11.61438 -11.33101 -11.11148 -10.67670 -10.50380 -9.74613 -9.48158 -8.19811 -6.37494 1.42359 1.43452 1.55344 1.83657 2.34383 2.65559 3.10708 3.62201 3.70660 3.76961 4.03518 4.23484 4.35737 4.40008 4.63262 4.67604 4.73898 4.75911 4.89497 4.91989 5.01874 5.07787 5.13689 5.18101 5.22242 5.31297 5.41024 5.44181 5.57502 5.60456 5.68165 5.89500 6.08659 6.44126 6.69907 6.73444 6.97903 7.31227 7.59085 8.86476 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045333 B = 0.005121 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.498171 B = 5466.339305 C = 5626.496573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.708 5.708 13 C 0.495 3.505 14 O -0.586 6.586 15 C -0.162 4.162 16 C 0.133 3.867 17 N -0.844 5.844 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.109 4.109 22 H 0.038 0.962 23 H 0.064 0.936 24 H 0.013 0.987 25 H 0.265 0.735 26 H 0.403 0.597 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.345 0.655 30 H 0.337 0.663 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -6.535 14.996 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.204 4.204 16 C 0.039 3.961 17 N -0.379 5.379 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.147 4.147 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.238 0.762 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.508 -5.149 15.425 17.169 hybrid contribution -0.304 -0.889 -2.112 2.311 sum 5.204 -6.039 13.313 15.517 Atomic orbital electron populations 1.21876 0.98363 0.99272 0.99536 1.18297 0.91026 0.91831 0.82143 0.98531 1.21588 1.32499 1.13495 0.90947 0.91028 1.25806 0.94866 0.95576 1.02369 1.70056 1.37026 1.23987 1.24540 0.85297 0.78105 0.78520 0.78411 1.18369 1.20402 1.20970 1.46356 1.65209 1.14136 1.09967 1.21416 0.77426 0.87308 0.85623 1.90545 1.52879 1.17888 1.85479 1.22724 1.04492 1.00437 0.92741 1.21250 0.90386 0.92029 0.92439 1.59156 1.03868 1.32425 1.42432 1.22306 0.96806 0.98047 0.97393 1.22443 0.99820 0.97953 0.95370 1.22320 0.97382 0.94795 1.00870 1.22256 0.97749 0.99250 0.95424 0.94289 0.91715 0.96783 0.92569 0.76248 0.87119 0.87070 0.83724 0.85040 0.92969 0.93843 0.92043 0.91403 0.90400 0.90811 0.90582 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.96 2.56 44.24 0.11 14.07 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 4 C -0.55 -28.93 8.73 25.60 0.22 -28.70 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 9 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.71 -28.61 5.07 -446.11 -2.26 -30.87 16 13 C 0.49 18.62 7.33 87.66 0.64 19.26 16 14 O -0.59 -26.74 12.03 -3.03 -0.04 -26.78 16 15 C -0.16 -4.15 4.58 29.85 0.14 -4.02 16 16 C 0.13 3.40 0.81 4.25 0.00 3.40 16 17 N -0.84 -24.02 8.71 -148.73 -1.30 -25.31 16 18 C -0.11 -3.16 4.89 31.67 0.15 -3.00 16 19 C -0.12 -2.70 6.91 31.88 0.22 -2.48 16 20 C -0.12 -2.05 6.83 31.68 0.22 -1.83 16 21 C -0.11 -2.04 6.21 31.34 0.19 -1.84 16 22 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 24 H 0.01 0.65 8.14 -2.38 -0.02 0.64 16 25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.40 13.72 8.54 -92.70 -0.79 12.93 16 27 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.11 2.43 8.12 -2.38 -0.02 2.41 16 29 H 0.34 12.17 6.23 -89.70 -0.56 11.61 16 30 H 0.34 8.09 9.00 -89.69 -0.81 7.28 16 31 H 0.05 1.57 7.84 -2.39 -0.02 1.55 16 32 H 0.04 1.58 7.34 -2.39 -0.02 1.57 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.40 7.91 -2.39 -0.02 1.38 16 38 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 Total: -1.00 -64.27 300.72 0.61 -63.66 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -1.09 Total: 37.81 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.02 Total: -9.92 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.31 Total: -108.75 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -64.27 0.61 -63.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082772451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.222 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds