Wall clock time and date at job start Mon Mar 30 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46882 * 2 1 4 4 C 1.46497 * 119.99869 * 95.55956 * 3 2 1 5 5 C 1.50700 * 109.47381 * 269.99578 * 4 3 2 6 6 H 1.07997 * 119.99354 * 359.72713 * 5 4 3 7 7 C 1.37875 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00301 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99657 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47347 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47332 * 300.00033 * 9 7 5 13 13 C 1.34773 * 119.99834 * 275.55629 * 3 2 1 14 14 O 1.21281 * 120.00155 * 175.34544 * 13 3 2 15 15 C 1.50700 * 119.99815 * 355.34566 * 13 3 2 16 16 H 1.08996 * 110.02227 * 3.34647 * 15 13 3 17 17 C 1.54267 * 110.03253 * 241.90210 * 15 13 3 18 18 C 1.54885 * 104.19964 * 217.10867 * 17 15 13 19 19 C 1.54889 * 102.74717 * 37.94194 * 18 17 15 20 20 C 1.53880 * 110.03289 * 124.74120 * 15 13 3 21 21 H 1.09000 * 110.02669 * 238.57241 * 20 15 13 22 22 N 1.46905 * 110.02782 * 359.97438 * 20 15 13 23 23 H 1.09002 * 109.46539 * 60.00300 * 1 2 3 24 24 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46992 * 300.00529 * 1 2 3 26 26 H 1.08994 * 109.47388 * 239.99316 * 2 1 3 27 27 H 1.09002 * 109.46539 * 119.99700 * 2 1 3 28 28 H 1.09011 * 109.46758 * 149.99602 * 4 3 2 29 29 H 1.08997 * 109.47366 * 30.00152 * 4 3 2 30 30 H 0.97000 * 120.00174 * 179.97438 * 8 7 5 31 31 H 1.09008 * 110.48687 * 335.78742 * 17 15 13 32 32 H 1.09004 * 110.48890 * 98.42601 * 17 15 13 33 33 H 1.09000 * 110.75863 * 279.63044 * 18 17 15 34 34 H 1.08999 * 110.76002 * 156.25775 * 18 17 15 35 35 H 1.09005 * 110.48388 * 203.37899 * 19 18 17 36 36 H 1.09001 * 110.60167 * 80.79325 * 19 18 17 37 37 H 1.00903 * 110.99419 * 174.82757 * 22 20 15 38 38 H 1.00898 * 111.00100 * 298.77687 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3784 2.0308 1.2628 5 6 1.1686 2.7250 1.8334 6 1 0.2270 2.6899 1.3057 7 6 1.2655 3.4101 3.0260 8 7 2.4137 3.4583 3.6652 9 14 -0.2343 4.2700 3.7336 10 1 -1.3069 3.2727 3.9789 11 1 0.1310 4.9296 5.0129 12 1 -0.7192 5.2917 2.7712 13 6 2.1364 2.0542 -1.1617 14 8 2.4595 3.2232 -1.1552 15 6 1.8669 1.3541 -2.4687 16 1 1.5337 0.3330 -2.2834 17 6 3.1424 1.3456 -3.3364 18 6 2.6203 1.5423 -4.7813 19 6 1.4607 2.5514 -4.5913 20 6 0.7977 2.1209 -3.2667 21 1 -0.0541 1.4715 -3.4692 22 7 0.3607 3.3044 -2.5142 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.1662 2.7626 1.0832 29 1 2.7336 1.2805 1.9690 30 1 2.4819 3.9406 4.5041 31 1 3.8015 2.1666 -3.0539 32 1 3.6600 0.3907 -3.2445 33 1 2.2507 0.6018 -5.1899 34 1 3.3977 1.9628 -5.4192 35 1 0.7510 2.4765 -5.4152 36 1 1.8461 3.5680 -4.5122 37 1 -0.2782 3.8638 -3.0592 38 1 -0.0522 3.0401 -1.6323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:25 Heat of formation + Delta-G solvation = -37.577769 kcal Electronic energy + Delta-G solvation = -18453.057445 eV Core-core repulsion = 15716.206693 eV Total energy + Delta-G solvation = -2736.850752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70250 -36.99924 -34.96821 -32.67943 -32.40513 -29.96423 -29.19924 -26.86931 -26.11453 -23.04663 -22.68180 -20.69933 -20.16677 -17.63092 -16.97147 -16.40534 -15.46903 -15.12085 -15.04048 -14.54737 -13.89376 -13.82089 -13.60161 -13.13426 -12.62688 -12.35422 -12.09120 -11.53943 -11.42749 -11.36887 -11.11332 -10.99848 -10.91753 -10.82876 -10.73780 -10.62406 -10.52865 -10.24250 -9.96606 -9.49433 -8.61291 -8.34943 -8.07398 -7.44520 -5.95617 -3.98959 3.35266 3.40182 3.42748 3.67099 4.11243 4.51146 4.66185 4.73913 4.86621 5.16924 5.34612 5.39721 5.41885 5.51603 5.60699 5.66019 5.75167 5.81702 5.86763 5.92438 6.00766 6.06487 6.14367 6.20700 6.33835 6.34783 6.50477 6.75153 7.20157 7.53244 7.57754 7.74723 7.82138 8.02570 8.34995 8.65115 9.01774 9.40452 9.66231 11.12416 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.007257 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.577915 B = 3857.572301 C = 4012.962276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.608 5.608 4 C 0.249 3.751 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.515 3.485 14 O -0.503 6.503 15 C -0.118 4.118 16 H 0.084 0.916 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.118 4.118 20 C 0.106 3.894 21 H 0.031 0.969 22 N -0.823 5.823 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.331 0.669 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -8.079 -13.780 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.342 5.342 4 C 0.130 3.870 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.301 3.699 14 O -0.377 6.377 15 C -0.140 4.140 16 H 0.102 0.898 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.006 4.006 21 H 0.049 0.951 22 N -0.355 5.355 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.143 0.857 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.975 -7.148 -13.573 15.467 hybrid contribution -1.960 -0.059 0.521 2.028 sum -3.935 -7.207 -13.052 15.420 Atomic orbital electron populations 1.22251 0.96856 1.00742 1.02847 1.21345 0.94080 0.84537 1.01307 1.48311 1.64810 1.12724 1.08385 1.19195 0.96472 0.92857 0.78488 1.21395 0.96319 1.32300 1.05396 0.92572 1.24926 0.95978 0.96315 0.96995 1.69917 1.24144 1.42899 1.16744 0.86621 0.83009 0.79872 0.78236 1.20461 1.21319 1.20264 1.19868 0.78859 0.87053 0.84168 1.90674 1.45381 1.15084 1.86543 1.22202 0.97130 0.99593 0.95095 0.89808 1.22256 0.96233 1.02113 0.93837 1.22416 0.97836 0.98825 0.96681 1.22442 0.97178 1.00623 0.95310 1.21744 0.94940 0.90992 0.92958 0.95104 1.58818 1.48468 1.20902 1.07270 0.93725 0.92961 0.90794 0.92291 0.90782 0.94260 0.95517 0.92838 0.90402 0.91736 0.91786 0.91444 0.92345 0.90063 0.85724 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.09 37.16 0.37 -2.21 16 2 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 3 N -0.61 -12.95 2.47 -175.06 -0.43 -13.38 16 4 C 0.25 6.58 5.17 -5.20 -0.03 6.56 16 5 C -0.52 -14.55 9.21 -34.44 -0.32 -14.87 16 6 H 0.06 1.57 7.43 -52.49 -0.39 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.52 10.77 5.15 -10.99 -0.06 10.72 16 14 O -0.50 -12.84 14.82 5.56 0.08 -12.76 16 15 C -0.12 -1.85 2.75 -90.65 -0.25 -2.10 16 16 H 0.08 1.16 5.31 -51.93 -0.28 0.88 16 17 C -0.11 -1.48 6.33 -25.07 -0.16 -1.64 16 18 C -0.12 -1.35 6.91 -24.74 -0.17 -1.53 16 19 C -0.12 -1.47 6.50 -25.08 -0.16 -1.63 16 20 C 0.11 1.53 3.99 -66.59 -0.27 1.26 16 21 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 22 N -0.82 -13.81 7.11 -3.72 -0.03 -13.83 16 23 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 26 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16 27 H 0.07 1.21 7.83 -51.93 -0.41 0.80 16 28 H 0.04 1.18 7.49 -51.92 -0.39 0.79 16 29 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.08 1.29 7.62 -51.92 -0.40 0.89 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 37 H 0.33 4.65 9.03 -39.29 -0.35 4.30 16 38 H 0.35 6.38 8.18 -39.29 -0.32 6.06 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -32.62 303.39 -7.39 -40.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.15 Total: 6.62 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.15 Total: -2.01 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.28 Total: -53.53 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.62 -7.39 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.433 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds