Wall clock time and date at job start Mon Mar 30 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46882 * 2 1 4 4 C 1.46497 * 119.99869 * 95.55956 * 3 2 1 5 5 C 1.50700 * 109.47381 * 269.99578 * 4 3 2 6 6 H 1.07997 * 119.99354 * 359.72713 * 5 4 3 7 7 C 1.37875 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00301 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99657 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47347 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47332 * 300.00033 * 9 7 5 13 13 C 1.34773 * 119.99834 * 275.55629 * 3 2 1 14 14 O 1.21281 * 120.00155 * 175.34544 * 13 3 2 15 15 C 1.50700 * 119.99815 * 355.34566 * 13 3 2 16 16 H 1.08996 * 110.02227 * 3.34647 * 15 13 3 17 17 C 1.54267 * 110.03253 * 241.90210 * 15 13 3 18 18 C 1.54885 * 104.19964 * 217.10867 * 17 15 13 19 19 C 1.54889 * 102.74717 * 37.94194 * 18 17 15 20 20 C 1.53880 * 110.03289 * 124.74120 * 15 13 3 21 21 H 1.09000 * 110.02669 * 238.57241 * 20 15 13 22 22 N 1.46905 * 110.02782 * 359.97438 * 20 15 13 23 23 H 1.09002 * 109.46539 * 60.00300 * 1 2 3 24 24 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46992 * 300.00529 * 1 2 3 26 26 H 1.08994 * 109.47388 * 239.99316 * 2 1 3 27 27 H 1.09002 * 109.46539 * 119.99700 * 2 1 3 28 28 H 1.09011 * 109.46758 * 149.99602 * 4 3 2 29 29 H 1.08997 * 109.47366 * 30.00152 * 4 3 2 30 30 H 0.97000 * 120.00174 * 179.97438 * 8 7 5 31 31 H 1.09008 * 110.48687 * 335.78742 * 17 15 13 32 32 H 1.09004 * 110.48890 * 98.42601 * 17 15 13 33 33 H 1.09000 * 110.75863 * 279.63044 * 18 17 15 34 34 H 1.08999 * 110.76002 * 156.25775 * 18 17 15 35 35 H 1.09005 * 110.48388 * 203.37899 * 19 18 17 36 36 H 1.09001 * 110.60167 * 80.79325 * 19 18 17 37 37 H 1.00903 * 110.99419 * 174.82757 * 22 20 15 38 38 H 1.00898 * 111.00100 * 298.77687 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3784 2.0308 1.2628 5 6 1.1686 2.7250 1.8334 6 1 0.2270 2.6899 1.3057 7 6 1.2655 3.4101 3.0260 8 7 2.4137 3.4583 3.6652 9 14 -0.2343 4.2700 3.7336 10 1 -1.3069 3.2727 3.9789 11 1 0.1310 4.9296 5.0129 12 1 -0.7192 5.2917 2.7712 13 6 2.1364 2.0542 -1.1617 14 8 2.4595 3.2232 -1.1552 15 6 1.8669 1.3541 -2.4687 16 1 1.5337 0.3330 -2.2834 17 6 3.1424 1.3456 -3.3364 18 6 2.6203 1.5423 -4.7813 19 6 1.4607 2.5514 -4.5913 20 6 0.7977 2.1209 -3.2667 21 1 -0.0541 1.4715 -3.4692 22 7 0.3607 3.3044 -2.5142 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.1662 2.7626 1.0832 29 1 2.7336 1.2805 1.9690 30 1 2.4819 3.9406 4.5041 31 1 3.8015 2.1666 -3.0539 32 1 3.6600 0.3907 -3.2445 33 1 2.2507 0.6018 -5.1899 34 1 3.3977 1.9628 -5.4192 35 1 0.7510 2.4765 -5.4152 36 1 1.8461 3.5680 -4.5122 37 1 -0.2782 3.8638 -3.0592 38 1 -0.0522 3.0401 -1.6323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:24 Heat of formation + Delta-G solvation = -60.658545 kcal Electronic energy + Delta-G solvation = -18454.058303 eV Core-core repulsion = 15716.206693 eV Total energy + Delta-G solvation = -2737.851610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16115 -38.35303 -36.67049 -34.81276 -33.57216 -31.59389 -30.49520 -28.67536 -27.32881 -24.95606 -24.15094 -21.80236 -21.49111 -19.09180 -18.62807 -18.35046 -17.05484 -16.52213 -16.31342 -16.20008 -15.40695 -15.27680 -14.78773 -14.60159 -14.16894 -14.05916 -13.74993 -13.24290 -13.03264 -12.81698 -12.68384 -12.53709 -12.35725 -12.18183 -11.99901 -11.91843 -11.85205 -11.63575 -11.59278 -11.42093 -10.59194 -10.25759 -9.40051 -9.20041 -8.16351 -6.29384 1.35716 1.40578 1.47156 2.08446 2.37405 2.55798 3.12407 3.52748 3.59283 3.78806 3.97251 4.14018 4.35263 4.42976 4.47038 4.48357 4.54367 4.67506 4.73035 4.85119 4.97198 5.02330 5.05997 5.08203 5.15539 5.19578 5.23134 5.31175 5.48466 5.52115 5.66863 5.98514 6.15215 6.35702 6.61042 6.79338 7.01181 7.36743 7.78815 8.90212 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.007257 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.577915 B = 3857.572301 C = 4012.962276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.614 5.614 4 C 0.265 3.735 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.511 3.489 14 O -0.562 6.562 15 C -0.111 4.111 16 H 0.112 0.888 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.116 4.116 20 C 0.101 3.899 21 H 0.060 0.940 22 N -0.846 5.846 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.072 0.928 28 H -0.011 1.011 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.342 0.658 38 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -10.113 -15.725 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.347 5.347 4 C 0.143 3.857 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.132 4.132 16 H 0.130 0.870 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.153 4.153 20 C -0.010 4.010 21 H 0.077 0.923 22 N -0.377 5.377 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.057 0.943 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.156 0.844 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.792 -9.231 -15.550 18.477 hybrid contribution -1.344 0.555 1.110 1.829 sum -5.136 -8.677 -14.440 17.612 Atomic orbital electron populations 1.22162 0.95538 1.02766 1.01401 1.21692 0.95132 0.81850 1.03237 1.48341 1.64894 1.14621 1.06840 1.18638 0.94654 0.91663 0.80732 1.21655 0.96641 1.32400 1.05538 0.92650 1.25842 0.99073 0.97055 0.97501 1.70051 1.26323 1.43820 1.17210 0.85532 0.79531 0.78792 0.77309 1.18537 1.20676 1.20493 1.20847 0.77079 0.86601 0.85554 1.90639 1.47868 1.17921 1.87495 1.22300 0.98692 1.00344 0.91913 0.87026 1.22306 0.95083 1.01938 0.95449 1.22421 0.97445 0.99915 0.94807 1.22442 0.98163 0.99513 0.95223 1.21965 0.95397 0.90582 0.93091 0.92250 1.58809 1.49015 1.22638 1.07279 0.93096 0.89101 0.94309 0.88252 0.90952 0.99255 0.96672 0.92697 0.94128 0.89366 0.88619 0.90460 0.89441 0.92779 0.84431 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.09 71.98 0.73 -3.80 16 2 C 0.10 3.22 5.79 86.38 0.50 3.72 16 3 N -0.61 -26.52 2.47 -826.15 -2.04 -28.56 16 4 C 0.26 14.69 5.17 85.63 0.44 15.14 16 5 C -0.52 -30.55 9.21 25.60 0.24 -30.31 16 6 H 0.06 3.17 7.43 -2.91 -0.02 3.15 16 7 C 0.00 0.19 5.46 84.66 0.46 0.66 16 8 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 9 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.51 21.66 5.15 87.66 0.45 22.11 16 14 O -0.56 -30.10 14.82 -3.03 -0.04 -30.15 16 15 C -0.11 -3.23 2.75 -10.81 -0.03 -3.26 16 16 H 0.11 2.59 5.31 -2.39 -0.01 2.58 16 17 C -0.11 -2.83 6.33 31.67 0.20 -2.63 16 18 C -0.11 -2.05 6.91 31.88 0.22 -1.83 16 19 C -0.12 -2.58 6.50 31.67 0.21 -2.37 16 20 C 0.10 2.67 3.99 45.64 0.18 2.85 16 21 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 22 N -0.85 -28.15 7.11 -165.67 -1.18 -29.33 16 23 H 0.05 1.36 7.85 -2.39 -0.02 1.34 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.36 7.58 -2.39 -0.02 1.35 16 26 H 0.10 2.32 6.12 -2.39 -0.01 2.30 16 27 H 0.07 2.28 7.83 -2.39 -0.02 2.26 16 28 H -0.01 -0.69 7.49 -2.38 -0.02 -0.71 16 29 H 0.02 0.86 7.86 -2.39 -0.02 0.85 16 30 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.04 1.35 7.62 -2.38 -0.02 1.33 16 32 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.50 8.05 -2.39 -0.02 1.48 16 37 H 0.34 9.48 9.03 -89.69 -0.81 8.67 16 38 H 0.33 12.34 8.18 -89.70 -0.73 11.61 16 Total: -1.00 -75.73 303.39 2.16 -73.58 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.49 Total: 23.91 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 3.60 Total: 0.28 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -2.93 Total: -115.69 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.04 Total: -30.15 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.73 2.16 -73.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.917 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds