Wall clock time and date at job start Mon Mar 30 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.47003 * 2 1 4 4 C 1.46495 * 119.99988 * 268.98990 * 3 2 1 5 5 C 1.50701 * 109.47017 * 270.00298 * 4 3 2 6 6 H 1.07995 * 120.00232 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99825 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46876 * 90.00146 * 9 7 5 11 11 H 1.48503 * 109.47276 * 209.99963 * 9 7 5 12 12 H 1.48496 * 109.47117 * 330.00150 * 9 7 5 13 13 C 1.34771 * 119.99643 * 88.99184 * 3 2 1 14 14 O 1.21289 * 119.99617 * 185.28244 * 13 3 2 15 15 C 1.50698 * 120.00639 * 5.27319 * 13 3 2 16 16 H 1.09004 * 110.01140 * 28.43149 * 15 13 3 17 17 C 1.54264 * 110.03377 * 149.87580 * 15 13 3 18 18 C 1.54888 * 104.19718 * 142.89817 * 17 15 13 19 19 C 1.54891 * 102.74857 * 322.05909 * 18 17 15 20 20 C 1.53874 * 110.03420 * 267.04361 * 15 13 3 21 21 H 1.09008 * 110.03165 * 121.42918 * 20 15 13 22 22 N 1.46899 * 110.03192 * 0.04546 * 20 15 13 23 23 H 1.09004 * 109.47136 * 300.00242 * 1 2 3 24 24 H 1.08997 * 109.47403 * 59.99700 * 1 2 3 25 25 H 1.09002 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47219 * 240.00453 * 2 1 3 27 27 H 1.09001 * 109.47030 * 119.99650 * 2 1 3 28 28 H 1.09005 * 109.47348 * 29.99852 * 4 3 2 29 29 H 1.08999 * 109.47106 * 150.00106 * 4 3 2 30 30 H 0.96996 * 119.99889 * 180.02562 * 8 7 5 31 31 H 1.09007 * 110.48298 * 261.57572 * 17 15 13 32 32 H 1.08995 * 110.48731 * 24.21800 * 17 15 13 33 33 H 1.09006 * 110.75319 * 80.36993 * 18 17 15 34 34 H 1.08996 * 110.75882 * 203.55450 * 18 17 15 35 35 H 1.08998 * 110.48051 * 279.26122 * 19 18 17 36 36 H 1.08998 * 110.48377 * 156.61872 * 19 18 17 37 37 H 1.00907 * 110.99438 * 173.42777 * 22 20 15 38 38 H 1.00893 * 110.99982 * 297.38421 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2836 2.0644 -1.2685 5 6 3.7139 1.8251 -1.6784 6 1 4.3607 1.2246 -1.0561 7 6 4.1966 2.3728 -2.8480 8 7 3.4090 3.1045 -3.6056 9 14 5.9697 2.0768 -3.3558 10 1 6.0476 0.8505 -4.1897 11 1 6.4614 3.2394 -4.1381 12 1 6.8098 1.9051 -2.1434 13 6 2.2235 2.0234 1.1670 14 8 2.5353 3.1955 1.1675 15 6 2.0655 1.2852 2.4713 16 1 2.2845 0.2268 2.3298 17 6 3.0090 1.8837 3.5349 18 6 2.1912 1.8173 4.8486 19 6 0.7564 2.1589 4.3757 20 6 0.6332 1.4603 3.0058 21 1 0.1574 0.4868 3.1247 22 7 -0.1498 2.2935 2.0835 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6155 1.6758 -2.0371 29 1 2.1145 3.1344 -1.1472 30 1 3.7486 3.4895 -4.4286 31 1 3.9164 1.2856 3.6198 32 1 3.2537 2.9171 3.2897 33 1 2.2286 0.8156 5.2767 34 1 2.5509 2.5557 5.5653 35 1 0.6374 3.2368 4.2663 36 1 0.0199 1.7617 5.0741 37 1 -1.1186 2.3300 2.3632 38 1 0.2415 3.2208 2.0131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:33 Heat of formation + Delta-G solvation = -44.805457 kcal Electronic energy + Delta-G solvation = -18416.570716 eV Core-core repulsion = 15679.406547 eV Total energy + Delta-G solvation = -2737.164169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82365 -37.05498 -35.03109 -32.72130 -32.43806 -29.86220 -29.23899 -26.87818 -26.09548 -23.01505 -22.63547 -20.70540 -20.31272 -17.59619 -17.14864 -16.23178 -15.98559 -15.47971 -14.66162 -14.45649 -14.05069 -13.59057 -13.26766 -13.03012 -12.85381 -12.42281 -12.17636 -11.91891 -11.40405 -11.30722 -11.09726 -11.06073 -10.98695 -10.80358 -10.72386 -10.58480 -10.47076 -10.14891 -9.98532 -9.51231 -8.65794 -8.42003 -8.35608 -7.40497 -5.96102 -4.00732 3.34065 3.40273 3.44623 3.66116 4.15492 4.50426 4.53140 4.75231 4.77285 5.07357 5.34567 5.39001 5.42255 5.48608 5.59101 5.63582 5.73823 5.78528 5.88385 5.97061 6.02579 6.06506 6.23084 6.26299 6.35612 6.52782 6.57721 6.91628 7.24576 7.31546 7.59751 7.63764 7.75895 8.03176 8.35146 8.69625 9.00983 9.33800 9.64810 11.11495 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030947 B = 0.007094 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.552402 B = 3946.212806 C = 4334.712340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.112 3.888 3 N -0.586 5.586 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.538 3.462 14 O -0.557 6.557 15 C -0.117 4.117 16 H 0.089 0.911 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.157 4.157 20 C 0.105 3.895 21 H 0.084 0.916 22 N -0.837 5.837 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.336 0.664 38 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -6.210 14.310 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 N -0.316 5.316 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.324 3.676 14 O -0.436 6.436 15 C -0.139 4.139 16 H 0.107 0.893 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.007 4.007 21 H 0.102 0.898 22 N -0.368 5.368 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.148 0.852 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.367 -6.012 13.514 16.103 hybrid contribution 0.797 0.260 0.354 0.910 sum -5.570 -5.753 13.868 16.013 Atomic orbital electron populations 1.22381 0.96461 1.00386 1.04277 1.21337 0.94060 0.84281 1.01537 1.48007 1.63020 1.13056 1.07508 1.19176 0.95514 0.93865 0.78524 1.21502 0.96839 1.31851 1.06174 0.92653 1.24933 0.97771 0.95043 0.96409 1.69943 1.35709 1.33896 1.13894 0.86533 0.84974 0.77630 0.78487 1.20697 1.21140 1.19970 1.19668 0.76348 0.86959 0.84581 1.90604 1.49507 1.16456 1.87074 1.22130 0.95699 1.01050 0.94982 0.89293 1.22383 0.97148 1.03045 0.92841 1.22404 0.94939 1.01095 0.97317 1.23239 0.97513 1.00882 0.98068 1.21918 0.92727 0.97046 0.89031 0.89814 1.58917 1.05842 1.19572 1.52469 0.89713 0.92830 0.93697 0.91008 0.92310 0.95403 0.93946 0.92845 0.91640 0.89518 0.91680 0.91693 0.91467 0.91863 0.85181 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 10.23 37.16 0.38 -2.29 16 2 C 0.11 1.96 6.00 -4.04 -0.02 1.94 16 3 N -0.59 -12.84 2.46 -175.06 -0.43 -13.27 16 4 C 0.25 6.75 5.20 -5.20 -0.03 6.72 16 5 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.54 11.29 5.10 -10.99 -0.06 11.24 16 14 O -0.56 -13.94 14.66 5.55 0.08 -13.86 16 15 C -0.12 -1.80 2.68 -90.66 -0.24 -2.04 16 16 H 0.09 1.27 5.93 -51.93 -0.31 0.96 16 17 C -0.12 -1.67 6.31 -25.07 -0.16 -1.83 16 18 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 19 C -0.16 -1.70 6.51 -25.07 -0.16 -1.87 16 20 C 0.11 1.31 3.20 -66.60 -0.21 1.09 16 21 H 0.08 0.91 8.04 -51.92 -0.42 0.50 16 22 N -0.84 -11.28 6.09 -3.72 -0.02 -11.30 16 23 H 0.08 1.22 4.75 -51.93 -0.25 0.98 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 27 H 0.06 0.88 5.75 -51.93 -0.30 0.58 16 28 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 32 H 0.09 1.49 6.87 -51.93 -0.36 1.13 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.34 3.58 9.08 -39.29 -0.36 3.22 16 38 H 0.35 5.55 7.60 -39.30 -0.30 5.26 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -32.66 298.72 -7.24 -39.90 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.99 Total: 5.77 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.10 Total: -2.51 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.28 Total: -51.11 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.66 -7.24 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.905 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds