Wall clock time and date at job start Mon Mar 30 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.47003 * 2 1 4 4 C 1.46495 * 119.99988 * 268.98990 * 3 2 1 5 5 C 1.50701 * 109.47017 * 270.00298 * 4 3 2 6 6 H 1.07995 * 120.00232 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99825 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46876 * 90.00146 * 9 7 5 11 11 H 1.48503 * 109.47276 * 209.99963 * 9 7 5 12 12 H 1.48496 * 109.47117 * 330.00150 * 9 7 5 13 13 C 1.34771 * 119.99643 * 88.99184 * 3 2 1 14 14 O 1.21289 * 119.99617 * 185.28244 * 13 3 2 15 15 C 1.50698 * 120.00639 * 5.27319 * 13 3 2 16 16 H 1.09004 * 110.01140 * 28.43149 * 15 13 3 17 17 C 1.54264 * 110.03377 * 149.87580 * 15 13 3 18 18 C 1.54888 * 104.19718 * 142.89817 * 17 15 13 19 19 C 1.54891 * 102.74857 * 322.05909 * 18 17 15 20 20 C 1.53874 * 110.03420 * 267.04361 * 15 13 3 21 21 H 1.09008 * 110.03165 * 121.42918 * 20 15 13 22 22 N 1.46899 * 110.03192 * 0.04546 * 20 15 13 23 23 H 1.09004 * 109.47136 * 300.00242 * 1 2 3 24 24 H 1.08997 * 109.47403 * 59.99700 * 1 2 3 25 25 H 1.09002 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47219 * 240.00453 * 2 1 3 27 27 H 1.09001 * 109.47030 * 119.99650 * 2 1 3 28 28 H 1.09005 * 109.47348 * 29.99852 * 4 3 2 29 29 H 1.08999 * 109.47106 * 150.00106 * 4 3 2 30 30 H 0.96996 * 119.99889 * 180.02562 * 8 7 5 31 31 H 1.09007 * 110.48298 * 261.57572 * 17 15 13 32 32 H 1.08995 * 110.48731 * 24.21800 * 17 15 13 33 33 H 1.09006 * 110.75319 * 80.36993 * 18 17 15 34 34 H 1.08996 * 110.75882 * 203.55450 * 18 17 15 35 35 H 1.08998 * 110.48051 * 279.26122 * 19 18 17 36 36 H 1.08998 * 110.48377 * 156.61872 * 19 18 17 37 37 H 1.00907 * 110.99438 * 173.42777 * 22 20 15 38 38 H 1.00893 * 110.99982 * 297.38421 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2836 2.0644 -1.2685 5 6 3.7139 1.8251 -1.6784 6 1 4.3607 1.2246 -1.0561 7 6 4.1966 2.3728 -2.8480 8 7 3.4090 3.1045 -3.6056 9 14 5.9697 2.0768 -3.3558 10 1 6.0476 0.8505 -4.1897 11 1 6.4614 3.2394 -4.1381 12 1 6.8098 1.9051 -2.1434 13 6 2.2235 2.0234 1.1670 14 8 2.5353 3.1955 1.1675 15 6 2.0655 1.2852 2.4713 16 1 2.2845 0.2268 2.3298 17 6 3.0090 1.8837 3.5349 18 6 2.1912 1.8173 4.8486 19 6 0.7564 2.1589 4.3757 20 6 0.6332 1.4603 3.0058 21 1 0.1574 0.4868 3.1247 22 7 -0.1498 2.2935 2.0835 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6155 1.6758 -2.0371 29 1 2.1145 3.1344 -1.1472 30 1 3.7486 3.4895 -4.4286 31 1 3.9164 1.2856 3.6198 32 1 3.2537 2.9171 3.2897 33 1 2.2286 0.8156 5.2767 34 1 2.5509 2.5557 5.5653 35 1 0.6374 3.2368 4.2663 36 1 0.0199 1.7617 5.0741 37 1 -1.1186 2.3300 2.3632 38 1 0.2415 3.2208 2.0131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:32 Heat of formation + Delta-G solvation = -67.798504 kcal Electronic energy + Delta-G solvation = -18417.567769 eV Core-core repulsion = 15679.406547 eV Total energy + Delta-G solvation = -2738.161222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25337 -38.39644 -36.77070 -34.86540 -33.50894 -31.53124 -30.50413 -28.65912 -27.26865 -25.01779 -24.06563 -21.72587 -21.63718 -19.12241 -18.65373 -18.23621 -17.30376 -17.14311 -16.37452 -15.76870 -15.40916 -15.09525 -14.54317 -14.38427 -14.25120 -14.02978 -13.64624 -13.40892 -13.17080 -13.06816 -12.62630 -12.50429 -12.36340 -12.19673 -12.06149 -11.92628 -11.88818 -11.68808 -11.55172 -11.36393 -10.63566 -10.34024 -9.47483 -9.24525 -8.20532 -6.36908 1.34986 1.38348 1.48780 2.06237 2.35292 2.57638 3.07196 3.46376 3.70939 3.75816 3.95266 4.17070 4.29976 4.49545 4.50034 4.53439 4.61142 4.67873 4.78492 4.79173 5.01199 5.02697 5.11668 5.16033 5.18211 5.23442 5.27364 5.34221 5.47920 5.62377 5.67216 5.97498 6.11054 6.23092 6.63810 6.72925 7.00876 7.30471 7.68631 8.85714 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030947 B = 0.007094 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.552402 B = 3946.212806 C = 4334.712340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.267 3.733 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.531 3.469 14 O -0.609 6.609 15 C -0.111 4.111 16 H 0.109 0.891 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.151 4.151 20 C 0.108 3.892 21 H 0.115 0.885 22 N -0.850 5.850 23 H 0.094 0.906 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.011 0.989 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.352 0.648 38 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -8.638 16.234 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 N -0.323 5.323 4 C 0.146 3.854 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.320 3.680 14 O -0.491 6.491 15 C -0.132 4.132 16 H 0.127 0.873 17 C -0.159 4.159 18 C -0.147 4.147 19 C -0.190 4.190 20 C -0.004 4.004 21 H 0.133 0.867 22 N -0.381 5.381 23 H 0.113 0.887 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.029 0.971 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.167 0.833 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.433 -8.493 15.463 18.779 hybrid contribution 0.775 1.042 -0.257 1.324 sum -5.658 -7.451 15.206 17.854 Atomic orbital electron populations 1.22302 0.94410 1.02366 1.03376 1.21635 0.95721 0.81736 1.02588 1.48033 1.63463 1.14710 1.06082 1.18560 0.94568 0.91525 0.80796 1.21768 0.97702 1.32212 1.06617 0.92998 1.25905 1.02682 0.94451 0.96281 1.70073 1.37964 1.34546 1.14356 0.85396 0.78811 0.78255 0.78227 1.18739 1.20517 1.19690 1.20695 0.74672 0.86629 0.85974 1.90573 1.51526 1.19074 1.87972 1.22234 0.98418 1.01009 0.91555 0.87289 1.22399 0.98067 1.00756 0.94702 1.22392 0.93979 1.02944 0.95359 1.23190 0.98288 0.99984 0.97582 1.22051 0.90630 0.98435 0.89277 0.86733 1.58888 1.07079 1.18650 1.53472 0.88736 0.95596 0.90183 0.92329 0.88810 0.97116 0.98803 0.92449 0.90924 0.93294 0.88951 0.91010 0.93007 0.88797 0.83346 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 10.23 71.98 0.74 -4.00 16 2 C 0.11 3.58 6.00 86.38 0.52 4.10 16 3 N -0.59 -26.65 2.46 -826.14 -2.03 -28.68 16 4 C 0.27 15.32 5.20 85.63 0.45 15.77 16 5 C -0.54 -32.85 9.39 25.60 0.24 -32.60 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 9 Si 0.97 46.27 29.54 68.60 2.03 48.30 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.53 22.77 5.10 87.66 0.45 23.21 16 14 O -0.61 -32.25 14.66 -3.06 -0.04 -32.30 16 15 C -0.11 -3.22 2.68 -10.82 -0.03 -3.25 16 16 H 0.11 2.72 5.93 -2.38 -0.01 2.70 16 17 C -0.12 -3.35 6.31 31.67 0.20 -3.15 16 18 C -0.11 -2.04 6.91 31.89 0.22 -1.82 16 19 C -0.15 -2.79 6.51 31.67 0.21 -2.58 16 20 C 0.11 2.37 3.20 45.64 0.15 2.51 16 21 H 0.11 1.89 8.04 -2.38 -0.02 1.87 16 22 N -0.85 -22.07 6.09 -165.67 -1.01 -23.08 16 23 H 0.09 2.50 4.75 -2.38 -0.01 2.49 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 2.12 8.06 -2.39 -0.02 2.11 16 27 H 0.09 2.51 5.75 -2.39 -0.01 2.50 16 28 H 0.01 0.64 8.07 -2.38 -0.02 0.62 16 29 H -0.01 -0.41 7.36 -2.39 -0.02 -0.43 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.73 6.87 -2.39 -0.02 1.72 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.13 7.90 -2.39 -0.02 1.11 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.35 6.90 9.08 -89.69 -0.81 6.08 16 38 H 0.34 10.88 7.60 -89.70 -0.68 10.20 16 Total: -1.00 -75.65 298.72 2.39 -73.26 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.43 Total: 21.58 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 3.59 Total: -1.02 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -2.75 Total: -109.83 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.04 Total: -32.30 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.65 2.39 -73.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.462 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds