Wall clock time and date at job start Mon Mar 30 2020 03:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47212 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47421 * 210.00302 * 8 6 4 11 11 H 1.48504 * 109.47342 * 330.00327 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 17 17 C 1.53001 * 109.47207 * 299.99218 * 15 13 12 18 18 C 1.53003 * 109.47453 * 300.00575 * 17 15 13 19 19 C 1.52999 * 109.46917 * 299.99643 * 18 17 15 20 20 C 1.53007 * 109.46946 * 60.00202 * 19 18 17 21 21 C 1.52999 * 109.47004 * 179.97438 * 15 13 12 22 22 H 1.08998 * 109.47611 * 179.97438 * 21 15 13 23 23 N 1.46893 * 109.47309 * 299.99917 * 21 15 13 24 24 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 25 25 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 27 27 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 29 29 H 1.09001 * 109.47038 * 60.00421 * 17 15 13 30 30 H 1.08995 * 109.47475 * 180.02562 * 17 15 13 31 31 H 1.08995 * 109.47357 * 179.97438 * 18 17 15 32 32 H 1.09003 * 109.47092 * 59.99545 * 18 17 15 33 33 H 1.08998 * 109.47611 * 299.99858 * 19 18 17 34 34 H 1.08993 * 109.47209 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46846 * 180.02562 * 20 19 18 36 36 H 1.08990 * 109.47379 * 59.99681 * 20 19 18 37 37 H 1.00898 * 111.00305 * 179.97438 * 23 21 15 38 38 H 1.00904 * 111.00247 * 303.95099 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6381 -1.1239 3.4053 17 6 1.6923 -1.8858 3.9285 18 6 0.2885 -1.3353 4.1884 19 6 0.3348 -0.3537 5.3610 20 6 1.2807 0.8005 5.0229 21 6 2.6849 0.2501 4.7628 22 1 3.0436 -0.2649 5.6540 23 7 3.5934 1.3578 4.4380 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7086 1.1614 -3.4843 28 1 2.2489 -1.6319 1.1525 29 1 1.6593 -2.5852 3.0931 30 1 2.0511 -2.4005 4.8197 31 1 -0.3854 -2.1575 4.4288 32 1 -0.0705 -0.8203 3.2973 33 1 0.6938 -0.8686 6.2521 34 1 -0.6651 0.0388 5.5459 35 1 1.3139 1.4996 5.8585 36 1 0.9216 1.3154 4.1319 37 1 3.6412 2.0207 5.1972 38 1 4.5116 1.0143 4.1991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:32 Heat of formation + Delta-G solvation = -56.474314 kcal Electronic energy + Delta-G solvation = -18368.267088 eV Core-core repulsion = 15630.596919 eV Total energy + Delta-G solvation = -2737.670168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92627 -36.88820 -34.55700 -33.36923 -32.30430 -30.91363 -28.54524 -27.77586 -25.17826 -23.28016 -21.77993 -21.23337 -19.79850 -18.76750 -16.61760 -15.77331 -15.50105 -15.32522 -14.89445 -14.52787 -14.20830 -13.99089 -13.31537 -13.04541 -12.46339 -12.16505 -12.13138 -11.97950 -11.76057 -11.52952 -11.05078 -11.00186 -10.85814 -10.65570 -10.43387 -10.24355 -10.16723 -10.10259 -9.90348 -8.94459 -8.66003 -8.45387 -8.15370 -7.66993 -6.05452 -4.14066 3.27665 3.34445 3.36773 3.69479 4.22516 4.44404 4.65057 4.79905 5.00477 5.21470 5.26513 5.33850 5.40821 5.57756 5.60976 5.65340 5.68923 5.92267 6.02223 6.10533 6.26743 6.34272 6.39021 6.46600 6.85290 6.93128 7.07860 7.26336 7.45817 7.62312 7.69200 7.72105 7.81491 8.03778 8.25310 8.84193 8.93296 9.39095 9.56402 11.00430 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.006238 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.450079 B = 4487.523977 C = 4589.946331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.512 3.488 14 O -0.523 6.523 15 C -0.109 4.109 16 H 0.083 0.917 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.115 4.115 20 C -0.128 4.128 21 C 0.121 3.879 22 H 0.026 0.974 23 N -0.829 5.829 24 H 0.087 0.913 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.263 0.737 28 H 0.383 0.617 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.335 0.665 38 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -5.140 14.339 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.366 5.366 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.131 4.131 16 H 0.101 0.899 17 C -0.145 4.145 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.166 4.166 21 C 0.009 3.991 22 H 0.044 0.956 23 N -0.358 5.358 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.215 0.785 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.120 -3.981 13.606 14.220 hybrid contribution 1.065 -1.366 -0.075 1.734 sum 2.186 -5.346 13.530 14.711 Atomic orbital electron populations 1.22061 0.98794 0.98813 1.00677 1.18628 0.90724 0.93923 0.80192 0.93537 1.21256 1.32151 1.13040 0.90525 0.92283 1.24885 0.94923 0.94962 0.98987 1.69908 1.36067 1.22489 1.23708 0.86484 0.79134 0.79277 0.82399 1.20624 1.21114 1.19930 1.46515 1.66222 1.13264 1.10626 1.19994 0.78823 0.87469 0.84071 1.90594 1.49455 1.15464 1.84382 1.21464 1.00110 0.96299 0.95239 0.89888 1.21475 0.95077 0.96344 1.01616 1.21572 0.96406 0.98720 0.99438 1.21496 0.99520 0.96691 0.97555 1.21855 0.93803 0.97416 1.03485 1.20977 0.94069 0.90505 0.93560 0.95582 1.58483 1.13823 1.17144 1.46330 0.89406 0.95738 0.96765 0.92692 0.78533 0.91188 0.91715 0.92116 0.91092 0.92874 0.92142 0.93192 0.87523 0.85265 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.27 6.93 2.56 -69.09 -0.18 6.76 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.72 -15.19 4.96 -54.94 -0.27 -15.46 16 13 C 0.51 10.21 5.43 -10.99 -0.06 10.15 16 14 O -0.52 -12.32 12.54 5.55 0.07 -12.25 16 15 C -0.11 -1.61 2.66 -91.77 -0.24 -1.86 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.11 -1.35 5.36 -26.73 -0.14 -1.49 16 18 C -0.12 -1.66 5.70 -26.73 -0.15 -1.82 16 19 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 20 C -0.13 -1.87 5.21 -26.70 -0.14 -2.01 16 21 C 0.12 1.67 2.84 -67.69 -0.19 1.48 16 22 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 23 N -0.83 -11.80 8.04 -4.65 -0.04 -11.84 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.38 7.18 7.96 -40.82 -0.32 6.85 16 29 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.18 7.22 -51.93 -0.37 0.81 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 2.01 5.51 -51.93 -0.29 1.72 16 37 H 0.33 4.05 9.04 -39.29 -0.36 3.69 16 38 H 0.33 4.25 8.99 -39.29 -0.35 3.89 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -30.76 295.96 -7.63 -38.39 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.14 Total: 12.20 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.32 Total: -6.70 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.32 Total: -52.07 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.76 -7.63 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.080 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds