Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47212 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47421 * 210.00302 * 8 6 4 11 11 H 1.48504 * 109.47342 * 330.00327 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 17 17 C 1.53001 * 109.47207 * 299.99218 * 15 13 12 18 18 C 1.53003 * 109.47453 * 300.00575 * 17 15 13 19 19 C 1.52999 * 109.46917 * 299.99643 * 18 17 15 20 20 C 1.53007 * 109.46946 * 60.00202 * 19 18 17 21 21 C 1.52999 * 109.47004 * 179.97438 * 15 13 12 22 22 H 1.08998 * 109.47611 * 179.97438 * 21 15 13 23 23 N 1.46893 * 109.47309 * 299.99917 * 21 15 13 24 24 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 25 25 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 27 27 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 29 29 H 1.09001 * 109.47038 * 60.00421 * 17 15 13 30 30 H 1.08995 * 109.47475 * 180.02562 * 17 15 13 31 31 H 1.08995 * 109.47357 * 179.97438 * 18 17 15 32 32 H 1.09003 * 109.47092 * 59.99545 * 18 17 15 33 33 H 1.08998 * 109.47611 * 299.99858 * 19 18 17 34 34 H 1.08993 * 109.47209 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46846 * 180.02562 * 20 19 18 36 36 H 1.08990 * 109.47379 * 59.99681 * 20 19 18 37 37 H 1.00898 * 111.00305 * 179.97438 * 23 21 15 38 38 H 1.00904 * 111.00247 * 303.95099 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6381 -1.1239 3.4053 17 6 1.6923 -1.8858 3.9285 18 6 0.2885 -1.3353 4.1884 19 6 0.3348 -0.3537 5.3610 20 6 1.2807 0.8005 5.0229 21 6 2.6849 0.2501 4.7628 22 1 3.0436 -0.2649 5.6540 23 7 3.5934 1.3578 4.4380 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7086 1.1614 -3.4843 28 1 2.2489 -1.6319 1.1525 29 1 1.6593 -2.5852 3.0931 30 1 2.0511 -2.4005 4.8197 31 1 -0.3854 -2.1575 4.4288 32 1 -0.0705 -0.8203 3.2973 33 1 0.6938 -0.8686 6.2521 34 1 -0.6651 0.0388 5.5459 35 1 1.3139 1.4996 5.8585 36 1 0.9216 1.3154 4.1319 37 1 3.6412 2.0207 5.1972 38 1 4.5116 1.0143 4.1991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = -79.225330 kcal Electronic energy + Delta-G solvation = -18369.253646 eV Core-core repulsion = 15630.596919 eV Total energy + Delta-G solvation = -2738.656726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30294 -38.35409 -36.42919 -34.60016 -34.06975 -32.28129 -30.30486 -28.95891 -27.31699 -24.60400 -23.13893 -22.49591 -21.41612 -20.36067 -18.42772 -17.21854 -17.09832 -16.67457 -16.36231 -15.77383 -15.68035 -15.41088 -14.73168 -14.54947 -14.27151 -13.70374 -13.50341 -13.23394 -13.10129 -12.97071 -12.84203 -12.73058 -12.63756 -12.25480 -12.12590 -12.02280 -11.58120 -11.24519 -11.07435 -10.93527 -10.60617 -10.13795 -9.51140 -9.27709 -8.15255 -6.32817 1.44272 1.45445 1.56004 2.14929 2.38701 2.79899 3.14579 3.57621 3.72789 3.87480 4.17982 4.22059 4.34812 4.45070 4.53881 4.58576 4.61807 4.77376 4.89895 4.94587 4.98196 5.06613 5.15182 5.24809 5.29416 5.35529 5.39393 5.48610 5.63981 5.72681 5.80456 6.01304 6.17370 6.46905 6.74548 6.77465 7.20276 7.36335 7.84857 8.90929 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.006238 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.450079 B = 4487.523977 C = 4589.946331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.276 3.724 3 H -0.008 1.008 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.716 5.716 13 C 0.507 3.493 14 O -0.564 6.564 15 C -0.101 4.101 16 H 0.104 0.896 17 C -0.103 4.103 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.128 4.128 21 C 0.121 3.879 22 H 0.063 0.937 23 N -0.853 5.853 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.008 0.992 27 H 0.264 0.736 28 H 0.397 0.603 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.345 0.655 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -7.748 15.728 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.172 3.828 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.366 5.366 13 C 0.294 3.706 14 O -0.443 6.443 15 C -0.123 4.123 16 H 0.122 0.878 17 C -0.141 4.141 18 C -0.163 4.163 19 C -0.148 4.148 20 C -0.166 4.166 21 C 0.010 3.990 22 H 0.080 0.920 23 N -0.385 5.385 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.231 0.769 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.222 -6.619 15.028 16.570 hybrid contribution 0.702 -0.468 -0.464 0.963 sum 2.925 -7.087 14.563 16.458 Atomic orbital electron populations 1.21848 0.98727 0.99001 0.99103 1.18168 0.90696 0.91596 0.82301 0.99046 1.21588 1.32371 1.13405 0.91049 0.91100 1.25826 0.94945 0.95587 1.02385 1.70068 1.37191 1.24036 1.24479 0.85344 0.78984 0.78036 0.77957 1.19575 1.21243 1.18814 1.46300 1.66588 1.13851 1.09893 1.20997 0.77478 0.87171 0.84971 1.90594 1.50902 1.17681 1.85100 1.21515 1.01381 0.96892 0.92487 0.87812 1.21529 0.93733 0.95359 1.03469 1.21582 0.97542 0.99231 0.97944 1.21482 0.99137 0.95871 0.98273 1.21786 0.94962 0.98301 1.01587 1.21041 0.93438 0.90358 0.94212 0.91957 1.58450 1.14482 1.18076 1.47447 0.91901 0.94432 0.97305 0.92656 0.76860 0.90883 0.87876 0.89957 0.95495 0.89700 0.92248 0.92119 0.92487 0.84133 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.28 14.86 2.56 44.24 0.11 14.97 16 3 H -0.01 -0.54 7.58 -2.39 -0.02 -0.55 16 4 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 8 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 12 N -0.72 -30.66 4.96 -446.11 -2.21 -32.88 16 13 C 0.51 20.42 5.43 87.66 0.48 20.89 16 14 O -0.56 -27.85 12.54 -3.04 -0.04 -27.89 16 15 C -0.10 -2.77 2.66 -11.54 -0.03 -2.80 16 16 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 17 C -0.10 -2.24 5.36 30.60 0.16 -2.07 16 18 C -0.13 -3.12 5.70 30.60 0.17 -2.95 16 19 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 20 C -0.13 -3.63 5.21 30.61 0.16 -3.47 16 21 C 0.12 3.06 2.84 44.93 0.13 3.19 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 N -0.85 -23.40 8.04 -168.62 -1.36 -24.76 16 24 H 0.06 3.63 6.07 -2.38 -0.01 3.61 16 25 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.40 14.55 7.96 -92.71 -0.74 13.82 16 29 H 0.07 1.56 7.56 -2.39 -0.02 1.54 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 0.90 7.22 -2.39 -0.02 0.88 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.23 5.51 -2.39 -0.01 2.21 16 37 H 0.35 7.97 9.04 -89.70 -0.81 7.16 16 38 H 0.34 8.19 8.99 -89.69 -0.81 7.38 16 Total: -1.00 -70.00 295.96 0.08 -69.92 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -1.28 Total: 33.82 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 2.70 Total: -9.09 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.33 Total: -111.68 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.04 Total: -27.89 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.00 0.08 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.306 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds