Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21281 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00182 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.46680 * 299.99959 * 15 13 12 17 17 C 1.52996 * 109.47182 * 59.99417 * 15 13 12 18 18 C 1.53008 * 109.47118 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46531 * 300.00283 * 18 17 15 20 20 C 1.52996 * 109.47651 * 60.00044 * 19 18 17 21 21 C 1.52997 * 109.46979 * 299.99895 * 20 19 18 22 22 H 1.09000 * 109.47286 * 299.99596 * 21 20 19 23 23 N 1.46896 * 109.47079 * 179.97438 * 21 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 29 29 H 1.08997 * 109.47722 * 300.00110 * 17 15 13 30 30 H 1.08999 * 109.46912 * 60.01010 * 17 15 13 31 31 H 1.08997 * 109.47075 * 180.02562 * 18 17 15 32 32 H 1.08992 * 109.46975 * 59.99826 * 18 17 15 33 33 H 1.08998 * 109.47417 * 299.99164 * 19 18 17 34 34 H 1.09004 * 109.46671 * 180.02562 * 19 18 17 35 35 H 1.08993 * 109.47391 * 179.97438 * 20 19 18 36 36 H 1.09007 * 109.46870 * 59.99379 * 20 19 18 37 37 H 1.00901 * 111.00060 * 59.99782 * 23 21 20 38 38 H 1.00906 * 111.00182 * 183.95384 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1586 -2.4115 15 6 2.6490 -0.7288 -3.5877 16 1 3.6482 -1.1213 -3.3984 17 6 1.7046 -1.8824 -3.9313 18 6 2.2145 -2.6042 -5.1803 19 6 2.2665 -1.6212 -6.3517 20 6 3.2109 -0.4676 -6.0081 21 6 2.7010 0.2540 -4.7591 22 1 1.7020 0.6466 -4.9486 23 7 3.6081 1.3613 -4.4288 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.2490 -1.6317 -1.1525 29 1 1.6679 -2.5828 -3.0970 30 1 0.7055 -1.4899 -4.1206 31 1 1.5415 -3.4258 -5.4254 32 1 3.2135 -2.9966 -4.9908 33 1 1.2674 -1.2288 -6.5414 34 1 2.6293 -2.1355 -7.2417 35 1 3.2482 0.2323 -6.8427 36 1 4.2100 -0.8602 -5.8185 37 1 3.6600 2.0247 -5.1872 38 1 3.3291 1.8137 -3.5710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -68.141363 kcal Electronic energy + Delta-G solvation = -17970.254936 eV Core-core repulsion = 15232.078847 eV Total energy + Delta-G solvation = -2738.176089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84163 -37.44356 -34.86926 -33.26945 -32.37351 -31.06275 -28.76195 -27.78399 -25.25409 -23.49331 -21.91924 -20.91396 -19.76599 -19.22661 -17.17309 -15.82525 -15.46954 -15.25587 -14.98093 -14.51243 -14.49263 -14.05323 -13.68132 -13.15399 -12.64196 -12.42337 -12.32691 -11.83554 -11.68865 -11.47695 -11.20658 -11.08798 -10.97153 -10.73655 -10.66295 -10.55691 -10.28105 -10.24802 -10.16664 -9.04179 -8.86571 -8.54848 -8.36743 -7.88325 -6.12207 -4.21321 3.23832 3.31632 3.34400 3.40499 4.09836 4.38262 4.59710 4.70685 4.85867 5.08878 5.20045 5.25518 5.41980 5.44748 5.48848 5.51423 5.61712 5.84780 5.91621 6.06871 6.12364 6.14367 6.18285 6.25304 6.45937 6.82085 6.95762 7.15280 7.42492 7.49804 7.58208 7.69832 7.87567 7.92390 8.15556 8.68445 8.78789 9.14697 9.46554 10.93798 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.005604 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.626326 B = 4995.652002 C = 5229.005948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.510 3.490 14 O -0.563 6.563 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.112 4.112 21 C 0.115 3.885 22 H 0.037 0.963 23 N -0.853 5.853 24 H 0.026 0.974 25 H 0.013 0.987 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.388 0.612 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.330 0.670 38 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -5.823 -14.419 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.352 5.352 13 C 0.295 3.705 14 O -0.443 6.443 15 C -0.126 4.126 16 H 0.116 0.884 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.150 4.150 21 C 0.003 3.997 22 H 0.055 0.945 23 N -0.389 5.389 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.221 0.779 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.544 -5.409 -14.177 15.386 hybrid contribution -0.466 -0.283 0.863 1.021 sum 2.078 -5.692 -13.314 14.628 Atomic orbital electron populations 1.22067 0.98536 0.99036 1.00806 1.18742 0.90957 0.94004 0.80176 0.93415 1.21263 1.32295 1.13171 0.90352 0.92060 1.24889 0.94814 0.94952 0.99077 1.69913 1.35962 1.22536 1.23744 0.86395 0.78594 0.79545 0.82576 1.19734 1.20865 1.20890 1.46528 1.64604 1.13527 1.10536 1.20443 0.77907 0.87354 0.84796 1.90510 1.52112 1.16442 1.85234 1.21428 1.01017 0.96437 0.93698 0.88450 1.21515 0.98820 0.96280 0.98244 1.21537 1.01498 0.97734 0.94696 1.21542 0.99893 0.96468 0.97861 1.21582 0.99638 0.97043 0.96751 1.20951 0.94433 0.91400 0.92950 0.94512 1.58964 1.55254 1.14971 1.09667 0.95531 0.96774 0.89197 0.92656 0.77932 0.91050 0.91556 0.91810 0.91682 0.92091 0.91968 0.92242 0.91213 0.85845 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.71 -14.75 4.96 -54.93 -0.27 -15.02 16 13 C 0.51 10.14 6.86 -10.99 -0.08 10.06 16 14 O -0.56 -13.04 13.55 5.56 0.08 -12.97 16 15 C -0.10 -1.57 2.24 -91.78 -0.21 -1.77 16 16 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 17 C -0.11 -1.38 5.10 -26.73 -0.14 -1.52 16 18 C -0.12 -1.17 5.92 -26.72 -0.16 -1.33 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.11 -1.26 5.50 -26.73 -0.15 -1.40 16 21 C 0.11 1.64 2.37 -67.72 -0.16 1.48 16 22 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 23 N -0.85 -12.96 9.23 -4.67 -0.04 -13.00 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 7.12 7.96 -40.82 -0.32 6.80 16 29 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.33 4.26 9.04 -39.29 -0.36 3.90 16 38 H 0.36 6.52 6.26 -39.29 -0.25 6.27 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -29.48 299.72 -7.60 -37.08 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.22 Total: 13.47 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.27 Total: -5.38 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.31 Total: -52.44 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.48 -7.60 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.063 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds