Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21281 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00182 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.46680 * 299.99959 * 15 13 12 17 17 C 1.52996 * 109.47182 * 59.99417 * 15 13 12 18 18 C 1.53008 * 109.47118 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46531 * 300.00283 * 18 17 15 20 20 C 1.52996 * 109.47651 * 60.00044 * 19 18 17 21 21 C 1.52997 * 109.46979 * 299.99895 * 20 19 18 22 22 H 1.09000 * 109.47286 * 299.99596 * 21 20 19 23 23 N 1.46896 * 109.47079 * 179.97438 * 21 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 29 29 H 1.08997 * 109.47722 * 300.00110 * 17 15 13 30 30 H 1.08999 * 109.46912 * 60.01010 * 17 15 13 31 31 H 1.08997 * 109.47075 * 180.02562 * 18 17 15 32 32 H 1.08992 * 109.46975 * 59.99826 * 18 17 15 33 33 H 1.08998 * 109.47417 * 299.99164 * 19 18 17 34 34 H 1.09004 * 109.46671 * 180.02562 * 19 18 17 35 35 H 1.08993 * 109.47391 * 179.97438 * 20 19 18 36 36 H 1.09007 * 109.46870 * 59.99379 * 20 19 18 37 37 H 1.00901 * 111.00060 * 59.99782 * 23 21 20 38 38 H 1.00906 * 111.00182 * 183.95384 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1586 -2.4115 15 6 2.6490 -0.7288 -3.5877 16 1 3.6482 -1.1213 -3.3984 17 6 1.7046 -1.8824 -3.9313 18 6 2.2145 -2.6042 -5.1803 19 6 2.2665 -1.6212 -6.3517 20 6 3.2109 -0.4676 -6.0081 21 6 2.7010 0.2540 -4.7591 22 1 1.7020 0.6466 -4.9486 23 7 3.6081 1.3613 -4.4288 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.2490 -1.6317 -1.1525 29 1 1.6679 -2.5828 -3.0970 30 1 0.7055 -1.4899 -4.1206 31 1 1.5415 -3.4258 -5.4254 32 1 3.2135 -2.9966 -4.9908 33 1 1.2674 -1.2288 -6.5414 34 1 2.6293 -2.1355 -7.2417 35 1 3.2482 0.2323 -6.8427 36 1 4.2100 -0.8602 -5.8185 37 1 3.6600 2.0247 -5.1872 38 1 3.3291 1.8137 -3.5710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -89.154967 kcal Electronic energy + Delta-G solvation = -17971.166154 eV Core-core repulsion = 15232.078847 eV Total energy + Delta-G solvation = -2739.087308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26371 -38.76200 -36.72679 -34.63575 -34.02782 -32.36169 -30.44092 -28.95240 -27.35512 -24.73662 -23.20449 -22.31898 -21.19787 -20.60249 -18.90211 -17.54151 -17.20204 -16.51073 -16.35205 -16.03134 -15.72260 -15.29322 -15.02882 -14.56386 -14.34014 -13.96312 -13.64777 -13.30282 -13.02780 -12.88150 -12.85242 -12.72471 -12.49414 -12.29666 -12.20448 -12.11991 -11.63257 -11.45854 -11.16164 -11.07315 -10.64818 -10.40750 -9.79349 -9.53952 -8.18732 -6.36306 1.43647 1.44726 1.56870 1.81019 2.35062 2.63712 3.11790 3.51489 3.65908 3.79691 4.10266 4.27602 4.34937 4.38396 4.49499 4.52260 4.53855 4.73559 4.88931 4.92892 4.98383 5.07350 5.12531 5.22832 5.26635 5.30019 5.34584 5.42574 5.54905 5.60597 5.67325 5.89290 6.08344 6.27501 6.61121 6.72330 6.96099 7.31652 7.55540 8.87758 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.005604 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.626326 B = 4995.652002 C = 5229.005948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.599 6.599 15 C -0.092 4.092 16 H 0.108 0.892 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.104 4.104 21 C 0.112 3.888 22 H 0.017 0.983 23 N -0.856 5.856 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.342 0.658 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -8.250 -15.461 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.350 5.350 13 C 0.291 3.709 14 O -0.482 6.482 15 C -0.114 4.114 16 H 0.126 0.874 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.142 4.142 21 C 0.000 4.000 22 H 0.035 0.965 23 N -0.391 5.391 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.453 -7.873 -15.268 17.522 hybrid contribution -0.750 0.554 1.152 1.482 sum 2.702 -7.319 -14.116 16.128 Atomic orbital electron populations 1.21878 0.98353 0.99388 0.99403 1.18333 0.91047 0.91880 0.82105 0.98499 1.21574 1.32489 1.13502 0.90848 0.90972 1.25807 0.94850 0.95575 1.02364 1.70059 1.37042 1.24009 1.24547 0.85281 0.78099 0.78513 0.78338 1.18366 1.20979 1.20351 1.46291 1.64868 1.14133 1.09719 1.21391 0.76798 0.87053 0.85680 1.90497 1.53455 1.18361 1.85873 1.21440 1.01743 0.97015 0.91192 0.87434 1.21549 0.97587 0.95412 1.00112 1.21534 1.02413 0.97877 0.93068 1.21562 0.99416 0.95885 0.98707 1.21545 0.99975 0.97551 0.95142 1.21080 0.93574 0.91215 0.94169 0.96485 1.59018 1.55221 1.15494 1.09322 0.94091 0.97116 0.91576 0.92559 0.76194 0.90465 0.92707 0.89933 0.90598 0.92400 0.89550 0.91152 0.90859 0.84571 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.27 14.19 2.56 44.25 0.11 14.30 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 4 C -0.55 -29.18 8.73 25.60 0.22 -28.96 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.09 11.32 21.44 0.24 -52.85 16 8 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.70 -29.56 4.96 -446.09 -2.21 -31.77 16 13 C 0.50 20.29 6.86 87.65 0.60 20.89 16 14 O -0.60 -28.92 13.55 -3.03 -0.04 -28.96 16 15 C -0.09 -2.69 2.24 -11.54 -0.03 -2.71 16 16 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 17 C -0.11 -2.50 5.10 30.60 0.16 -2.34 16 18 C -0.11 -1.83 5.92 30.60 0.18 -1.65 16 19 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 20 C -0.10 -2.07 5.50 30.59 0.17 -1.90 16 21 C 0.11 3.11 2.37 44.91 0.11 3.21 16 22 H 0.02 0.54 8.10 -2.39 -0.02 0.52 16 23 N -0.86 -25.93 9.23 -168.69 -1.56 -27.49 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 27 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 28 H 0.40 14.43 7.96 -92.71 -0.74 13.69 16 29 H 0.08 1.69 7.56 -2.39 -0.02 1.67 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.34 8.70 9.04 -89.69 -0.81 7.89 16 38 H 0.34 12.78 6.26 -89.69 -0.56 12.22 16 Total: -1.00 -65.08 299.72 0.23 -64.84 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -1.05 Total: 37.74 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 2.82 Total: -5.77 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.53 Total: -112.11 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.04 Total: -28.96 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.08 0.23 -64.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds