Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09003 * 110.43866 * 298.90913 * 16 14 12 18 18 C 1.54889 * 110.48560 * 61.45155 * 16 14 12 19 19 C 1.54894 * 102.75185 * 156.62078 * 18 16 14 20 20 C 1.54270 * 104.19298 * 322.06064 * 19 18 16 21 21 C 1.53880 * 106.59881 * 23.60536 * 20 19 18 22 22 H 1.09001 * 110.02846 * 240.71703 * 21 20 19 23 23 N 1.46899 * 110.03046 * 119.28818 * 21 20 19 24 24 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 25 25 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 26 26 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 27 27 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 28 28 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 29 29 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 30 30 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 31 31 H 1.09002 * 110.75649 * 274.93446 * 18 16 14 32 32 H 1.08995 * 110.75785 * 38.30395 * 18 16 14 33 33 H 1.09006 * 110.48411 * 80.73348 * 19 18 16 34 34 H 1.08993 * 110.49076 * 203.24811 * 19 18 16 35 35 H 1.08995 * 110.03573 * 142.89570 * 20 19 18 36 36 H 1.09004 * 110.02823 * 264.27743 * 20 19 18 37 37 H 1.00904 * 111.00009 * 62.83081 * 23 21 20 38 38 H 1.00894 * 110.99850 * 186.78904 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 3.9202 -1.5949 -3.0344 18 6 2.1094 -1.2120 -4.1933 19 6 2.7524 -1.3355 -5.5970 20 6 3.7324 -0.1463 -5.6701 21 6 4.0779 0.2284 -4.2182 22 1 3.7715 1.2545 -4.0145 23 7 5.5213 0.0789 -3.9897 24 1 -0.3634 0.4064 0.9439 25 1 -0.3634 0.6143 -0.8239 26 1 -0.3633 -1.0206 -0.1200 27 1 1.9161 -1.9110 3.4385 28 1 0.7376 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5968 -0.4708 31 1 1.7330 -2.1773 -3.8546 32 1 1.3147 -0.4660 -4.1968 33 1 3.2903 -2.2792 -5.6885 34 1 1.9920 -1.2541 -6.3736 35 1 4.6357 -0.4391 -6.2052 36 1 3.2587 0.6976 -6.1717 37 1 6.0474 0.7104 -4.5750 38 1 5.7491 0.2135 -3.0161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -47.618457 kcal Electronic energy + Delta-G solvation = -18272.501396 eV Core-core repulsion = 15535.215247 eV Total energy + Delta-G solvation = -2737.286149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90724 -37.37818 -35.45395 -33.03852 -32.40223 -30.58913 -28.56219 -26.61948 -26.05142 -24.77282 -22.08427 -20.74451 -19.53592 -18.22320 -17.53220 -16.91767 -15.62708 -15.44011 -15.19227 -14.64299 -14.18769 -13.82685 -13.44388 -13.16672 -12.71413 -12.50343 -12.14768 -11.85870 -11.76293 -11.57251 -11.43609 -11.31648 -11.04870 -10.88846 -10.77520 -10.60566 -10.49589 -10.08403 -9.78577 -9.16229 -9.02543 -8.55650 -8.31014 -7.76168 -6.51287 -4.13714 3.27174 3.39443 3.48405 3.62278 3.82290 4.47047 4.51505 4.59679 4.70001 5.00624 5.14481 5.29533 5.42502 5.48067 5.54726 5.64868 5.73374 5.84162 5.91665 5.94064 5.97368 6.06438 6.23603 6.28414 6.31575 6.37205 6.43707 6.60836 6.94844 7.16529 7.25424 7.46205 7.51489 7.86373 8.29635 8.36197 8.76356 8.95901 9.51439 10.83600 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.006845 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.516843 B = 4089.306530 C = 4338.704337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.235 3.765 3 H 0.053 0.947 4 C -0.617 4.617 5 H 0.062 0.938 6 C 0.043 3.957 7 N -0.894 5.894 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.280 1.280 12 N -0.584 5.584 13 C 0.084 3.916 14 C 0.509 3.491 15 O -0.560 6.560 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.098 3.902 22 H 0.058 0.942 23 N -0.844 5.844 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.269 0.731 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.337 0.663 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -1.313 -16.389 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.133 3.867 3 H 0.071 0.929 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.859 3.141 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.206 1.206 12 N -0.314 5.314 13 C -0.060 4.060 14 C 0.296 3.704 15 O -0.440 6.440 16 C -0.130 4.130 17 H 0.123 0.877 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.014 4.014 22 H 0.076 0.924 23 N -0.374 5.374 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.426 -0.281 -15.371 15.379 hybrid contribution 0.256 -0.417 -0.705 0.858 sum 0.682 -0.698 -16.076 16.105 Atomic orbital electron populations 1.22418 0.98741 1.00102 1.00042 1.19158 0.90322 0.94656 0.82588 0.92943 1.22107 1.41270 1.11144 0.90952 0.92011 1.25619 0.93244 1.05691 0.91843 1.70865 1.43664 1.06376 1.31736 0.84211 0.77618 0.76107 0.76120 1.20909 1.20227 1.20596 1.47907 1.48994 1.11638 1.22828 1.21712 0.98876 0.83041 1.02354 1.20405 0.78867 0.86951 0.84181 1.90606 1.58932 1.17411 1.77028 1.22171 0.97791 0.99466 0.93590 0.87717 1.22562 0.96576 1.01763 0.94398 1.22294 0.98052 0.98590 0.96657 1.22210 0.99508 0.98064 0.95903 1.21833 0.87854 0.98086 0.93641 0.92390 1.58974 1.05648 1.60680 1.12062 0.92021 0.95660 0.93509 0.92083 0.93694 0.92388 0.90211 0.90406 0.91163 0.91332 0.91682 0.90942 0.92045 0.85154 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.02 37.15 0.34 -3.08 16 2 C 0.23 5.76 2.23 -69.09 -0.15 5.60 16 3 H 0.05 1.42 5.48 -51.92 -0.28 1.13 16 4 C -0.62 -17.09 8.30 -34.44 -0.29 -17.38 16 5 H 0.06 1.82 7.38 -52.49 -0.39 1.43 16 6 C 0.04 1.23 5.20 -17.82 -0.09 1.14 16 7 N -0.89 -26.84 13.70 55.43 0.76 -26.08 16 8 Si 1.03 25.58 26.44 -169.99 -4.49 21.08 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.36 6.12 56.52 0.35 -6.01 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.58 -12.25 2.75 -175.27 -0.48 -12.73 16 13 C 0.08 1.41 7.73 59.85 0.46 1.88 16 14 C 0.51 10.31 7.07 -10.99 -0.08 10.23 16 15 O -0.56 -13.31 14.78 5.56 0.08 -13.23 16 16 C -0.11 -1.65 1.98 -90.12 -0.18 -1.83 16 17 H 0.10 1.58 7.40 -51.93 -0.38 1.20 16 18 C -0.11 -1.43 5.39 -24.74 -0.13 -1.56 16 19 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 20 C -0.12 -1.33 6.59 -25.61 -0.17 -1.50 16 21 C 0.10 1.38 3.39 -66.59 -0.23 1.15 16 22 H 0.06 0.96 6.90 -51.93 -0.36 0.60 16 23 N -0.84 -11.00 9.10 -3.72 -0.03 -11.03 16 24 H 0.06 1.41 5.44 -51.93 -0.28 1.13 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.96 7.45 -51.93 -0.39 0.57 16 27 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 28 H 0.04 0.65 7.59 -51.93 -0.39 0.26 16 29 H 0.06 0.83 5.92 -51.93 -0.31 0.52 16 30 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 31 H 0.08 0.87 6.15 -51.93 -0.32 0.55 16 32 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 3.66 9.07 -39.29 -0.36 3.31 16 38 H 0.35 4.92 9.01 -39.30 -0.35 4.57 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -31.46 292.79 -6.35 -37.81 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.90 Total: 6.51 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.69 Total: -6.74 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.24 Total: -49.85 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.49 Total: 21.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.46 -6.35 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.811 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds